Huixiao Hong
Huixiao Hong
National Center for Toxicological Research
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The MicroArray Quality Control (MAQC) project shows inter-and intraplatform reproducibility of gene expression measurements
L Shi, LH Reid, WD Jones, R Shippy, JA Warrington, SC Baker, PJ Collins, ...
Nature biotechnology 24 (9), 1151, 2006
The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models
MaQC Consortium
Nature biotechnology 28 (8), 827, 2010
A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium
Nature Biotechnology 32 (9), 903–914, 2014
Study of 202 natural, synthetic, and environmental chemicals for binding to the androgen receptor
H Fang, W Tong, WS Branham, CL Moland, SL Dial, H Hong, Q Xie, ...
Chemical research in toxicology 16 (10), 1338-1358, 2003
Coumarin-Based Inhibitors of HIV Integrase
H Zhao, N Neamati, H Hong, A Mazumder, S Wang, S Sunder, GWA Milne, ...
Journal of medicinal chemistry 40 (2), 242-249, 1997
The concordance between RNA-seq and microarray data depends on chemical treatment and transcript abundance
C Wang, B Gong, PR Bushel, J Thierry-Mieg, D Thierry-Mieg, J Xu, ...
Nature biotechnology 32 (9), 926-932, 2014
Depsides and depsidones as inhibitors of HIV-1 integrase: discovery of novel inhibitors through 3D database searching
N Neamati, H Hong, A Mazumder, S Wang, S Sunder, MC Nicklaus, ...
Journal of medicinal chemistry 40 (6), 942-951, 1997
A comparison of batch effect removal methods for enhancement of prediction performance using MAQC-II microarray gene expression data
J Luo, M Schumacher, A Scherer, D Sanoudou, D Megherbi, T Davison, ...
The pharmacogenomics journal 10 (4), 278-291, 2010
Comparison of RNA-seq and microarray-based models for clinical endpoint prediction
W Zhang, Y Yu, F Hertwig, J Thierry-Mieg, W Zhang, D Thierry-Mieg, ...
Genome biology 16 (1), 1-12, 2015
A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Y Yu, JC Fuscoe, C Zhao, C Guo, M Jia, T Qing, DI Bannon, L Lancashire, ...
Nature communications 5 (1), 1-11, 2014
ArrayTrack--supporting toxicogenomic research at the US Food and Drug Administration National Center for Toxicological Research.
W Tong, X Cao, S Harris, H Sun, H Fang, J Fuscoe, A Harris, H Hong, ...
Environmental health perspectives 111 (15), 1819-1826, 2003
Cross-platform comparability of microarray technology: intra-platform consistency and appropriate data analysis procedures are essential
L Shi, W Tong, H Fang, U Scherf, J Han, RK Puri, FW Frueh, FM Goodsaid, ...
BMC bioinformatics 6 (2), 1-14, 2005
Decision forest: combining the predictions of multiple independent decision tree models
W Tong, H Hong, H Fang, Q Xie, R Perkins
Journal of Chemical Information and Computer Sciences 43 (2), 525-531, 2003
The balance of reproducibility, sensitivity, and specificity of lists of differentially expressed genes in microarray studies
L Shi, WD Jones, RV Jensen, SC Harris, RG Perkins, FM Goodsaid, ...
BMC bioinformatics 9 (9), 1-19, 2008
HIV-1 integrase pharmacophore: discovery of inhibitors through three-dimensional database searching
MC Nicklaus, N Neamati, H Hong, A Mazumder, S Sunder, J Chen, ...
Journal of medicinal chemistry 40 (6), 920-929, 1997
CERAPP: collaborative estrogen receptor activity prediction project
K Mansouri, A Abdelaziz, A Rybacka, A Roncaglioni, A Tropsha, A Varnek, ...
Environmental health perspectives 124 (7), 1023-1033, 2016
Mold2, Molecular Descriptors from 2D Structures for Chemoinformatics and Toxicoinformatics
H Hong, Q Xie, W Ge, F Qian, H Fang, L Shi, Z Su, R Perkins, W Tong
Journal of chemical information and modeling 48 (7), 1337-1344, 2008
Next-generation sequencing and its applications in molecular diagnostics
Z Su, B Ning, H Fang, H Hong, R Perkins, W Tong, L Shi
Expert review of molecular diagnostics 11 (3), 333-343, 2011
Prediction of estrogen receptor binding for 58,000 chemicals using an integrated system of a tree-based model with structural alerts.
H Hong, W Tong, H Fang, L Shi, Q Xie, J Wu, R Perkins, JD Walker, ...
Environmental health perspectives 110 (1), 29-36, 2002
Assessment of prediction confidence and domain extrapolation of two structure–activity relationship models for predicting estrogen receptor binding activity
W Tong, Q Xie, H Hong, L Shi, H Fang, R Perkins
Environmental health perspectives 112 (12), 1249-1254, 2004
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