Comparative analysis of single-cell RNA sequencing methods C Ziegenhain, B Vieth, S Parekh, B Reinius, A Guillaumet-Adkins, ... Molecular cell 65 (4), 631-643. e4, 2017 | 1402 | 2017 |
Evolutionary routes and KRAS dosage define pancreatic cancer phenotypes S Mueller, T Engleitner, R Maresch, M Zukowska, S Lange, ... Nature 554 (7690), 62-68, 2018 | 371 | 2018 |
Benchmarking single-cell RNA-sequencing protocols for cell atlas projects E Mereu, A Lafzi, C Moutinho, C Ziegenhain, DJ McCarthy, ... Nature biotechnology 38 (6), 747-755, 2020 | 339 | 2020 |
zUMIs-A fast and flexible pipeline to process RNA sequencing data with UMIs S Parekh, C Ziegenhain, B Vieth, W Enard, I Hellmann Gigascience 7 (6), giy059, 2018 | 312 | 2018 |
Characterization of rare, dormant, and therapy-resistant cells in acute lymphoblastic leukemia S Ebinger, EZ Özdemir, C Ziegenhain, S Tiedt, CC Alves, M Grunert, ... Cancer cell 30 (6), 849-862, 2016 | 269 | 2016 |
The impact of amplification on differential expression analyses by RNA-seq S Parekh, C Ziegenhain, B Vieth, W Enard, I Hellmann Scientific reports 6 (1), 25533, 2016 | 255 | 2016 |
A systematic evaluation of single cell RNA-seq analysis pipelines B Vieth, S Parekh, C Ziegenhain, W Enard, I Hellmann Nature communications 10 (1), 4667, 2019 | 251 | 2019 |
Sensitive and powerful single-cell RNA sequencing using mcSCRB-seq JW Bagnoli, C Ziegenhain, A Janjic, LE Wange, B Vieth, S Parekh, ... Nature communications 9 (1), 2937, 2018 | 225 | 2018 |
powsimR: power analysis for bulk and single cell RNA-seq experiments B Vieth, C Ziegenhain, S Parekh, W Enard, I Hellmann Bioinformatics 33 (21), 3486-3488, 2017 | 142 | 2017 |
Quantitative single-cell transcriptomics C Ziegenhain, B Vieth, S Parekh, I Hellmann, W Enard Briefings in functional genomics 17 (4), 220-232, 2018 | 57 | 2018 |
Chromatin remodeling due to degradation of citrate carrier impairs osteogenesis of aged mesenchymal stem cells A Pouikli, S Parekh, M Maleszewska, C Nikopoulou, M Baghdadi, I Tripodi, ... Nature Aging 1 (9), 810-825, 2021 | 36 | 2021 |
Ageing and sources of transcriptional heterogeneity C Nikopoulou, S Parekh, P Tessarz Biological chemistry 400 (7), 867-878, 2019 | 26 | 2019 |
Histone N-terminal acetyltransferase NAA40 links one-carbon metabolism to chemoresistance C Demetriadou, A Raoukka, E Charidemou, C Mylonas, C Michael, ... Oncogene 41 (4), 571-585, 2022 | 9 | 2022 |
mcSCRB-seq: sensitive and powerful single-cell RNA sequencing JW Bagnoli, C Ziegenhain, A Janjic, LE Wange, B Vieth, S Parekh, ... BioRxiv, 188367, 2017 | 9 | 2017 |
Hypoxia promotes osteogenesis by facilitating acetyl‐CoA‐mediated mitochondrial–nuclear communication A Pouikli, M Maleszewska, S Parekh, M Yang, C Nikopoulou, JJ Bonfiglio, ... The EMBO Journal 41 (23), e111239, 2022 | 6 | 2022 |
Spatial and single-cell profiling of the metabolome, transcriptome and epigenome of the aging mouse liver C Nikopoulou, N Kleinenkuhnen, S Parekh, T Sandoval, C Ziegenhain, ... Nature aging 3 (11), 1430-1445, 2023 | 5 | 2023 |
Strategies for quantitative RNA-seq analyses among closely related species S Parekh, B Vieth, C Ziegenhain, W Enard, I Hellmann bioRxiv, 297408, 2018 | 5 | 2018 |
RNA-sequencing of single cholangiocyte-derived organoids reveals high organoid-to organoid variability K Gehling, S Parekh, F Schneider, M Kirchner, V Kondylis, C Nikopoulou, ... Life Science Alliance 5 (12), 2022 | 4 | 2022 |
Deregulated mito-nuclear communication alters chromatin plasticity and differentiation potential of mesenchymal stem cells upon ageing A Pouikli, S Parekh, M Maleszewska, M Baghdadi, I Tripodi, C Nikopoulou, ... bioRxiv, 2020.04. 02.022293, 2020 | 3 | 2020 |
Single-cell resolution unravels spatial alterations in metabolism, transcriptome and epigenome of ageing liver C Nikopoulou, N Kleinenkuhnen, S Parekh, T Sandoval, F Schneider, ... bioRxiv, 2021.12. 14.472593, 2021 | 2 | 2021 |