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A.R. Raphenya
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CARD 2017: expansion and model-centric curation of the comprehensive antibiotic resistance database
B Jia, AR Raphenya, B Alcock, N Waglechner, P Guo, KK Tsang, BA Lago, ...
Nucleic acids research, gkw1004, 2016
16512016
CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database
BP Alcock, AR Raphenya, TTY Lau, KK Tsang, M Bouchard, ...
Nucleic acids research 48 (D1), D517-D525, 2020
11882020
Metformin-induced increases in GDF15 are important for suppressing appetite and promoting weight loss
EA Day, RJ Ford, BK Smith, P Mohammadi-Shemirani, MR Morrow, ...
Nature Metabolism 1 (12), 1202-1208, 2019
1152019
Isolation, sequence, infectivity, and replication kinetics of severe acute respiratory syndrome coronavirus 2
A Banerjee, JA Nasir, P Budylowski, L Yip, P Aftanas, N Christie, ...
Emerging infectious diseases 26 (9), 2054, 2020
1032020
Failed recovery of glycemic control and myofibrillar protein synthesis with 2 wk of physical inactivity in overweight, prediabetic older adults
C McGlory, MT von Allmen, T Stokes, RW Morton, AJ Hector, BA Lago, ...
The Journals of Gerontology: Series A 73 (8), 1070-1077, 2018
842018
A comparison of whole genome sequencing of SARS-CoV-2 using amplicon-based sequencing, random hexamers, and bait capture
JA Nasir, RA Kozak, P Aftanas, AR Raphenya, KM Smith, F Maguire, ...
Viruses 12 (8), 895, 2020
582020
Capturing the resistome: a targeted capture method to reveal antibiotic resistance determinants in metagenomes
AK Guitor, AR Raphenya, J Klunk, M Kuch, B Alcock, MG Surette, ...
Antimicrobial agents and chemotherapy 64 (1), e01324-19, 2019
472019
The transcription factor, Nuclear factor, erythroid 2 (Nfe2), is a regulator of the oxidative stress response during Danio rerio development
LM Williams, BA Lago, AG McArthur, AR Raphenya, N Pray, N Saleem, ...
Aquatic toxicology 180, 141-154, 2016
262016
The origins and genomic diversity of American Civil War Era smallpox vaccine strains
AT Duggan, J Klunk, AF Porter, AN Dhody, R Hicks, GL Smith, ...
Genome biology 21 (1), 1-11, 2020
182020
The PHA4GE SARS-CoV-2 contextual data specification for open genomic epidemiology
EJ Griffiths, RE Timme, AJ Page, NF Alikhan, D Fornika, F Maguire, ...
MDPI AG, 2020
142020
The pesticide chlorpyrifos promotes obesity by inhibiting diet-induced thermogenesis in brown adipose tissue
B Wang, EE Tsakiridis, S Zhang, A Llanos, EM Desjardins, JM Yabut, ...
Nature communications 12 (1), 1-12, 2021
122021
Genetic population structure of the round whitefish (Prosopium cylindraceum) in North America: multiple markers reveal glacial refugia and regional subdivision
TD Morgan, CF Graham, AG McArthur, AR Raphenya, DR Boreham, ...
Canadian Journal of Fisheries and Aquatic Sciences 75 (6), 836-849, 2018
122018
Functional relatedness in the Inv/Mxi‐Spa type III secretion system family
JA Klein, BM Dave, AR Raphenya, AG McArthur, LA Knodler
Molecular microbiology 103 (6), 973-991, 2017
92017
Genotyping SARS-CoV-2 through an interactive web application
H Maan, H Mbareche, AR Raphenya, A Banerjee, JA Nasir, RA Kozak, ...
The Lancet Digital Health 2 (7), e340-e341, 2020
82020
Future-proofing and maximizing the utility of metadata: The PHA4GE SARS-CoV-2 contextual data specification package
EJ Griffiths, RE Timme, CI Mendes, AJ Page, NF Alikhan, D Fornika, ...
GigaScience 11, 2022
22022
Capturing the antibiotic resistome of preterm infants reveals new benefits of probiotic supplementation
AK Guitor, EI Yousuf, AR Raphenya, EK Hutton, KM Morrison, ...
Microbiome 10 (1), 1-16, 2022
2022
Metformin-induced reductions in tumor growth involves modulation of the gut microbiome
LA Broadfield, A Saigal, JC Szamosi, JA Hammill, K Bezverbnaya, ...
Molecular metabolism 61, 101498, 2022
2022
Datasets for benchmarking antimicrobial resistance genes in bacterial metagenomic and whole genome sequencing
AR Raphenya, J Robertson, C Jamin, L de Oliveira Martins, F Maguire, ...
Scientific data 9 (1), 1-6, 2022
2022
Performance Characteristics of Next-Generation Sequencing for the Detection of Antimicrobial Resistance Determinants in Escherichia coli Genomes and Metagenomes
AM Rooney, AR Raphenya, RG Melano, C Seah, NR Yee, ...
mSystems, e00022-22, 2022
2022
Enabling genomic island prediction and comparison in multiple genomes to investigate bacterial evolution and outbreaks
C Bertelli, KL Gray, N Woods, AC Lim, KE Tilley, GL Winsor, GR Hoad, ...
Microbial Genomics 8 (5), 000818, 2022
2022
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