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Damir Baranašić
Damir Baranašić
Research Associate at the Ruđer Bošković Institute
Geverifieerd e-mailadres voor irb.hr
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JASPAR 2020: update of the open-access database of transcription factor binding profiles
O Fornes, JA Castro-Mondragon, A Khan, R Van der Lee, X Zhang, ...
Nucleic acids research 48 (D1), D87-D92, 2020
16892020
JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework
A Khan, O Fornes, A Stigliani, M Gheorghe, JA Castro-Mondragon, ...
Nucleic acids research 46 (D1), D260-D266, 2018
16022018
JASPAR 2022: the 9th release of the open-access database of transcription factor binding profiles
JA Castro-Mondragon, R Riudavets-Puig, I Rauluseviciute, ...
Nucleic acids research 50 (D1), D165-D173, 2022
9762022
KEGG orthology-based annotation of the predicted proteome of Acropora digitifera: ZoophyteBase - an open access and searchable database of a coral genome
WC Dunlap, A Starcevic, D Baranasic, J Diminic, J Zucko, R Gacesa, ...
BMC genomics 14, 1-59, 2013
642013
Predicting substrate specificity of adenylation domains of nonribosomal peptide synthetases and other protein properties by latent semantic indexing
D Baranašić, J Zucko, J Diminic, R Gacesa, PF Long, J Cullum, ...
Journal of Industrial Microbiology and Biotechnology 41 (2), 461-467, 2014
552014
Draft genome sequence of Streptomyces rapamycinicus strain NRRL 5491, the producer of the immunosuppressant rapamycin
D Baranasic, R Gacesa, A Starcevic, J Zucko, M Blažič, M Horvat, ...
Genome announcements 1 (4), 10.1128/genomea. 00581-13, 2013
502013
Bacterial diversity of polluted surface sediments in the northern Adriatic Sea
M Korlević, J Zucko, MN Dragić, M Blažina, E Pustijanac, TV Zeljko, ...
Systematic and applied microbiology 38 (3), 189-197, 2015
422015
Evolutionary concepts in natural products discovery: what actinomycetes have taught us
J Diminic, A Starcevic, M Lisfi, D Baranasic, R Gacesa, D Hranueli, ...
Journal of Industrial Microbiology and Biotechnology 41 (2), 211-217, 2014
312014
Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements
D Baranasic, M Hörtenhuber, PJ Balwierz, T Zehnder, AK Mukarram, ...
Nature genetics 54 (7), 1037-1050, 2022
262022
JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles
I Rauluseviciute, R Riudavets-Puig, R Blanc-Mathieu, ...
Nucleic Acids Research 52 (D1), D174-D182, 2024
222024
Annotation of the modular polyketide synthase and nonribosomal peptide synthetase gene clusters in the genome of Streptomyces tsukubaensis NRRL18488
M Blažič, A Starcevic, M Lisfi, D Baranasic, D Goranovič, Š Fujs, E Kuščer, ...
Applied and environmental microbiology 78 (23), 8183-8190, 2012
202012
Genomic characterization of variable surface antigens reveals a telomere position effect as a prerequisite for RNA interference-mediated silencing in Paramecium tetraurelia
D Baranasic, T Oppermann, M Cheaib, J Cullum, H Schmidt, M Simon
MBio 5 (6), 10.1128/mbio. 01328-14, 2014
182014
Bioprospecting for genes encoding hydrocarbon-degrading enzymes from metagenomic samples isolated from northern adriatic sea sediments
R Gacesa, D Baranasic, A Starcevic, J Diminic, M Korlević, M Najdek, ...
Food technology and biotechnology 56 (2), 270, 2018
122018
Synthetic biology: A novel approach for the construction of industrial microorganisms
D Hranueli, A Starcevic, J Zucko, J Diego Rojas, J Diminic, D Baranasic, ...
Food technology and biotechnology 51 (1), 3-11, 2013
92013
Genome sequences of the oxytetracycline production strain Streptomyces rimosus R6-500 and two mutants with chromosomal rearrangements
D Baranasic, J Zucko, M Nair, A Pain, PF Long, D Hranueli, J Cullum, ...
Genome announcements 2 (4), 10.1128/genomea. 00517-14, 2014
82014
Genome sequence of Streptomyces olindensis DAUFPE 5622, producer of the antitumoral anthracycline cosmomycin D
JD Rojas, A Starcevic, D Baranas̆ić, MA Ferreira-Torres, CA Contreras, ...
Genome Announc. 2 (3), e00541-14, 2014
82014
Integrated annotation and analysis of genomic features reveal new types of functional elements and large-scale epigenetic phenomena in the developing zebrafish
D Baranasic, M Hörtenhuber, P Balwierz, T Zehnder, AK Mukarram, ...
bioRxiv, 2021.08. 09.454869, 2021
62021
Integrative genomic analyses in adipocytes implicate DNA methylation in human obesity and diabetes
L McAllan, D Baranasic, S Villicaña, S Brown, W Zhang, B Lehne, ...
Nature Communications 14 (1), 2784, 2023
52023
Reference-grade genome and large linear plasmid of Streptomyces rimosus: pushing the limits of Nanopore sequencing
L Slemc, J Jakše, A Filisetti, D Baranasic, A Rodríguez-García, ...
Microbiology spectrum 10 (2), e02434-21, 2022
52022
Zebrafish regulatory genomic resources for disease modelling and regeneration
A Jimenez Gonzalez, D Baranasic, F Müller
Disease Models & Mechanisms 16 (8), 2023
12023
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