| Qualitative simulation of genetic regulatory networks using piecewise-linear models H De Jong, JL Gouzé, C Hernandez, M Page, T Sari, J Geiselmann Bulletin of mathematical biology 66 (2), 301-340, 2004 | 550 | 2004 |
| Improvement of pCVD442, a suicide plasmid for gene allele exchange in bacteria N Philippe, JP Alcaraz, E Coursange, J Geiselmann, D Schneider Plasmid 51 (3), 246-255, 2004 | 442 | 2004 |
| Genetic Network Analyzer: qualitative simulation of genetic regulatory networks H De Jong, J Geiselmann, C Hernandez, M Page Bioinformatics 19 (3), 336-344, 2003 | 366 | 2003 |
| Validation of qualitative models of genetic regulatory networks by model checking: analysis of the nutritional stress response in Escherichia coli G Batt, D Ropers, H De Jong, J Geiselmann, R Mateescu, M Page, ... Bioinformatics 21 (suppl_1), i19-i28, 2005 | 245 | 2005 |
| Acetate metabolism and the inhibition of bacterial growth by acetate S Pinhal, D Ropers, J Geiselmann, H De Jong Journal of bacteriology 201 (13), 10.1128/jb. 00147-19, 2019 | 197 | 2019 |
| Shared control of gene expression in bacteria by transcription factors and global physiology of the cell S Berthoumieux, H De Jong, G Baptist, C Pinel, C Ranquet, D Ropers, ... Molecular systems biology 9 (1), 634, 2013 | 182 | 2013 |
| Qualitative simulation of the carbon starvation response in Escherichia coli D Ropers, H De Jong, M Page, D Schneider, J Geiselmann Biosystems 84 (2), 124-152, 2006 | 181 | 2006 |
| Long-Term Experimental Evolution in Escherichia coli. XII. DNA Topology as a Key Target of Selection E Crozat, N Philippe, RE Lenski, J Geiselmann, D Schneider Genetics 169 (2), 523-532, 2005 | 177 | 2005 |
| Qualitative simulation of the initiation of sporulation in Bacillus subtilis H De Jong, J Geiselmann, G Batt, C Hernandez, M Page Bulletin of mathematical biology 66, 261-299, 2004 | 168 | 2004 |
| Crl, a low temperature-induced protein in Escherichia coli that binds directly to the stationary phase σ subunit of RNA polymerase A Bougdour, C Lelong, J Geiselmann Journal of Biological Chemistry 279 (19), 19540-19550, 2004 | 163 | 2004 |
| A physical model for the translocation and helicase activities of Escherichia coli transcription termination protein Rho. J Geiselmann, Y Wang, SE Seifried, PH von Hippel Proceedings of the National Academy of Sciences 90 (16), 7754-7758, 1993 | 156 | 1993 |
| Parallel Changes in Global Protein Profiles During Long-Term Experimental Evolution in Escherichia coli L Pelosi, L Kuhn, D Guetta, J Garin, J Geiselmann, RE Lenski, ... Genetics 173 (4), 1851-1869, 2006 | 135 | 2006 |
| Understanding carbon catabolite repression in Escherichia coli using quantitative models A Kremling, J Geiselmann, D Ropers, H de Jong Trends in microbiology 23 (2), 99-109, 2015 | 121 | 2015 |
| Physical properties of the Escherichia coli transcription termination factor rho. 1. Association states and geometry of the rho hexamer J Geiselmann, TD Yager, SC Gill, P Calmettes, PH Von Hippel Biochemistry 31 (1), 111-121, 1992 | 116 | 1992 |
| Dynamical allocation of cellular resources as an optimal control problem: novel insights into microbial growth strategies N Giordano, F Mairet, JL Gouzé, J Geiselmann, H De Jong PLoS computational biology 12 (3), e1004802, 2016 | 112 | 2016 |
| A synthetic growth switch based on controlled expression of RNA polymerase J Izard, CDC Gomez Balderas, D Ropers, S Lacour, X Song, Y Yang, ... Molecular systems biology 11 (11), 840, 2015 | 102 | 2015 |
| Experimental and computational validation of models of fluorescent and luminescent reporter genes in bacteria H De Jong, C Ranquet, D Ropers, C Pinel, J Geiselmann BMC systems biology 4, 1-17, 2010 | 95 | 2010 |
| Hybrid modeling and simulation of genetic regulatory networks: A qualitative approach H De Jong, JL Gouzé, C Hernandez, M Page, T Sari, J Geiselmann International Workshop on Hybrid Systems: Computation and Control, 267-282, 2003 | 85 | 2003 |
| Functional interactions of ligand cofactors with Escherichia coli transcription termination factor rho. I. Binding of ATP J Geiselmann, PH Von Hippel Protein Science 1 (7), 850-860, 1992 | 83 | 1992 |
| Protein-DNA cross-linking at the lac promoter M Buckle, J Geiselmann, A Kolb, H Buc Nucleic acids research 19 (4), 833-840, 1991 | 82 | 1991 |
