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Marilia D. V. Braga
Marilia D. V. Braga
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Analysis and functional annotation of an expressed sequence tag collection for tropical crop sugarcane
AL Vettore, FR da Silva, EL Kemper, GM Souza, AM da Silva, MIT Ferro, ...
Genome research 13 (12), 2725-2735, 2003
3832003
Footprints of inversions at present and past pseudoautosomal boundaries in human sex chromosomes
C Lemaitre, MDV Braga, C Gautier, MF Sagot, E Tannier, GAB Marais
Genome biology and evolution 1, 56-66, 2009
1002009
Double cut and join with insertions and deletions
MDV Braga, E Willing, J Stoye
Journal of Computational Biology 18 (9), 1167-1184, 2011
852011
Whole-Genome Analysis of Transporters in the Plant Pathogen Xylella fastidiosa
J Meidanis, MDV Braga, S Verjovski-Almeida
Microbiology and Molecular Biology Reviews 66 (2), 272-299, 2002
622002
Bioinformatics of the sugarcane EST project
GP Telles, MDV Braga, Z Dias, L Tzy-Li, JAA Quitzau, FR Silva, ...
Genetics and Molecular Biology 24, 9-15, 2001
612001
The solution space of sorting by DCJ
MDV Braga, J Stoye
Journal of Computational Biology 17 (9), 1145-1165, 2010
582010
Exploring the solution space of sorting by reversals, with experiments and an application to evolution
MDV Braga, MF Sagot, C Scornavacca, E Tannier
IEEE/ACM transactions on computational biology and bioinformatics 5 (3), 348-356, 2008
572008
Genomic distance with DCJ and indels
MDV Braga, E Willing, J Stoye
Algorithms in Bioinformatics: 10th International Workshop, WABI 2010 …, 2010
452010
Repetition-free longest common subsequence
SS Adi, MDV Braga, CG Fernandes, CE Ferreira, FV Martinez, MF Sagot, ...
Discrete Applied Mathematics 158 (12), 1315-1324, 2010
442010
The solution space of sorting by reversals
MDV Braga, MF Sagot, C Scornavacca, E Tannier
International Symposium on Bioinformatics Research and Applications, 293-304, 2007
312007
Computing the rearrangement distance of natural genomes
L Bohnenkämper, MDV Braga, D Doerr, J Stoye
Journal of Computational Biology 28 (4), 410-431, 2021
292021
baobabLUNA : the solution space of sorting by reversals
MDV Braga
Bioinformatics 25 (14), 1833-1835, 2009
282009
On the family-free DCJ distance and similarity
FV Martinez, P Feijão, MDV Braga, J Stoye
Algorithms for Molecular Biology 10, 1-10, 2015
242015
Restricted DCJ model: rearrangement problems with chromosome reincorporation
J Kováč, R Warren, MDV Braga, J Stoye
Journal of Computational Biology 18 (9), 1231-1241, 2011
222011
On the inversion-indel distance
E Willing, S Zaccaria, MDV Braga, J Stoye
BMC bioinformatics 14, 1-10, 2013
202013
The potential of family-free genome comparison
MDV Braga, C Chauve, D Doerr, K Jahn, J Stoye, A Thévenin, R Wittler
Models and Algorithms for Genome Evolution, 287-307, 2013
192013
DCJ-indel and DCJ-substitution distances with distinct operation costs
PH da Silva, R Machado, S Dantas, MDV Braga
Algorithms for Molecular Biology 8, 1-15, 2013
162013
On the weight of indels in genomic distances
MDV Braga, R Machado, LC Ribeiro, J Stoye
BMC bioinformatics 12, 1-9, 2011
162011
Counting all DCJ sorting scenarios
MDV Braga, J Stoye
RECOMB International Workshop on Comparative Genomics, 36-47, 2009
152009
An algorithm that builds a set of strings given its overlap graph
MDV Braga, J Meidanis
Latin American Symposium on Theoretical Informatics, 52-63, 2002
152002
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Artikelen 1–20