Thomas J. Poorten
Thomas J. Poorten
Bioinformatic Scientist, Pairwise Plants
Verified email at ucdavis.edu
Title
Cited by
Cited by
Year
Complex history of the amphibian-killing chytrid fungus revealed with genome resequencing data
EB Rosenblum, TY James, KR Zamudio, TJ Poorten, D Ilut, D Rodriguez, ...
Proceedings of the National Academy of Sciences 110 (23), 9385-9390, 2013
2582013
Origin and evolution of the octoploid strawberry genome
PP Edger, TJ Poorten, R VanBuren, MA Hardigan, M Colle, MR McKain, ...
Nature genetics 51 (3), 541-547, 2019
1792019
Genome-wide transcriptional response of Silurana (Xenopus) tropicalis to infection with the deadly chytrid fungus
EB Rosenblum, TJ Poorten, M Settles, GK Murdoch, J Robert, N Maddox, ...
PloS one 4 (8), e6494, 2009
1142009
Single-molecule sequencing and optical mapping yields an improved genome of woodland strawberry (Fragaria vesca) with chromosome-scale contiguity
PP Edger, R VanBuren, M Colle, TJ Poorten, CM Wai, CE Niederhuth, ...
Gigascience 7 (2), gix124, 2018
1102018
The deadly chytrid fungus: a story of an emerging pathogen
EB Rosenblum, J Voyles, TJ Poorten, JE Stajich
PLoS Pathog 6 (1), e1000550, 2010
912010
Only skin deep: shared genetic response to the deadly chytrid fungus in susceptible frog species
EB Rosenblum, TJ Poorten, M Settles, GK Murdoch
Molecular Ecology 21 (13), 3110-3120, 2012
852012
Correlates of virulence in a frog-killing fungal pathogen: evidence from a California amphibian decline
J Piovia-Scott, K Pope, SJ Worth, EB Rosenblum, T Poorten, J Refsnider, ...
The ISME journal 9 (7), 1570-1578, 2015
492015
Substrate-specific gene expression in Batrachochytrium dendrobatidis, the chytrid pathogen of amphibians
EB Rosenblum, TJ Poorten, S Joneson, M Settles
PloS one 7 (11), e49924, 2012
402012
Genomic Correlates of Virulence Attenuation in the Deadly Amphibian Chytrid Fungus, Batrachochytrium dendrobatidis
JM Refsnider, TJ Poorten, PF Langhammer, PA Burrowes, EB Rosenblum
G3: Genes, Genomes, Genetics 5 (11), 2291-2298, 2015
352015
A molecular perspective: biology of the emerging pathogen Batrachochytrium dendrobatidis
EB Rosenblum, MC Fisher, TY James, JE Stajich, JE Longcore, LR Gentry, ...
Diseases of aquatic organisms 92 (2-3), 131-147, 2010
342010
Genome-Wide Association Mapping Uncovers Fw1, a Dominant Gene Conferring Resistance to Fusarium Wilt in Strawberry
DDA Pincot, TJ Poorten, MA Hardigan, JM Harshman, CB Acharya, ...
G3: Genes, Genomes, Genetics 8 (5), 1817-1828, 2018
282018
Maternal transfer of antibodies to eggs in Xenopus laevis
TJ Poorten, RE Kuhn
Developmental & Comparative Immunology 33 (2), 171-175, 2009
262009
Comparative study of host response to chytridiomycosis in a susceptible and a resistant toad species
TJ Poorten, EB Rosenblum
Molecular Ecology 25 (22), 5663-5679, 2016
232016
Unlocking the story in the swab: A new genotyping assay for the amphibian chytrid fungus Batrachochytrium dendrobatidis
AQ Byrne, AP Rothstein, TJ Poorten, J Erens, ML Settles, EB Rosenblum
Molecular ecology resources 17 (6), 1283-1292, 2017
182017
Colonization of novel White Sands habitat is associated with changes in lizard anti-predator behaviour
JM Robertson, K Hoversten, M Gruendler, TJ Poorten, DK Hews, ...
Biological Journal of the Linnean Society 103 (3), 657-667, 2011
172011
Domestication of temperate and coastal hybrids with distinct ancestral gene selection in octoploid strawberry
MA Hardigan, TJ Poorten, CB Acharya, GS Cole, KE Hummer, N Bassil, ...
The plant genome 11 (3), 180049, 2018
132018
Mountain Yellow-legged Frogs (Rana muscosa) did not Produce Detectable Antibodies in Immunization Experiments with Batrachochytrium dendrobatidis
TJ Poorten, MJ Stice-Kishiyama, CJ Briggs, EB Rosenblum
Journal of wildlife diseases 52 (1), 154-158, 2016
82016
Population genetic structure of the endangered Sierra Nevada yellow-legged frog (Rana sierrae) in Yosemite National Park based on multi-locus nuclear data from swab samples
TJ Poorten, RA Knapp, EB Rosenblum
Conservation Genetics 18 (4), 731-744, 2017
72017
Opening the file drawer: Unexpected insights from a chytrid infection experiment
AQ Byrne, TJ Poorten, J Voyles, CKR Willis, EB Rosenblum
PloS one 13 (5), e0196851, 2018
32018
Social Network Analysis of the Genealogy of Strawberry: Retracing the Wild Roots of Heirloom and Modern Cultivars
DDA Pincot, M Ledda, M Feldmann, MA Hardigan, TJ Poorten, D Runcie, ...
bioRxiv, 2020
22020
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Articles 1–20