| Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project Management Group Liefer Laura A. 51 Wetterstrand Kris A. 51 Good Peter J. 51 ... nature 447 (7146), 799-816, 2007 | 5797 | 2007 |
| Integration of external signaling pathways with the core transcriptional network in embryonic stem cells X Chen, H Xu, P Yuan, F Fang, M Huss, VB Vega, E Wong, YL Orlov, ... Cell 133 (6), 1106-1117, 2008 | 2837 | 2008 |
| An oestrogen-receptor-α-bound human chromatin interactome MJ Fullwood, MH Liu, YF Pan, J Liu, H Xu, YB Mohamed, YL Orlov, ... Nature 462 (7269), 58-64, 2009 | 1824 | 2009 |
| A global map of p53 transcription-factor binding sites in the human genome CL Wei, Q Wu, VB Vega, KP Chiu, P Ng, T Zhang, A Shahab, HC Yong, ... Cell 124 (1), 207-219, 2006 | 1405 | 2006 |
| Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation G Li, X Ruan, RK Auerbach, KS Sandhu, M Zheng, P Wang, HM Poh, ... Cell 148 (1-2), 84-98, 2012 | 1264 | 2012 |
| Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma WK Sung, H Zheng, S Li, R Chen, X Liu, Y Li, NP Lee, WH Lee, ... Nature genetics 44 (7), 765-769, 2012 | 884 | 2012 |
| CTCF-mediated functional chromatin interactome in pluripotent cells L Handoko, H Xu, G Li, CY Ngan, E Chew, M Schnapp, CWH Lee, C Ye, ... Nature genetics 43 (7), 630-638, 2011 | 742 | 2011 |
| Exploiting indirect neighbours and topological weight to predict protein function from protein–protein interactions HN Chua, WK Sung, L Wong Bioinformatics 22 (13), 1623-1630, 2006 | 651 | 2006 |
| Whole-genome mapping of histone H3 Lys4 and 27 trimethylations reveals distinct genomic compartments in human embryonic stem cells XD Zhao, X Han, JL Chew, J Liu, KP Chiu, A Choo, YL Orlov, WK Sung, ... Cell stem cell 1 (3), 286-298, 2007 | 635 | 2007 |
| A common BIM deletion polymorphism mediates intrinsic resistance and inferior responses to tyrosine kinase inhibitors in cancer KP Ng, AM Hillmer, CTH Chuah, WC Juan, TK Ko, ASM Teo, ... Nature medicine 18 (4), 521-528, 2012 | 625 | 2012 |
| Global mapping of c-Myc binding sites and target gene networks in human B cells KI Zeller, XD Zhao, CWH Lee, KP Chiu, F Yao, JT Yustein, HS Ooi, ... Proceedings of the National Academy of Sciences 103 (47), 17834-17839, 2006 | 621 | 2006 |
| Assemblathon 1: a competitive assessment of de novo short read assembly methods D Earl, K Bradnam, JS John, A Darling, D Lin, J Fass, HOK Yu, V Buffalo, ... Genome research 21 (12), 2224-2241, 2011 | 601 | 2011 |
| Whole-genome sequencing identifies recurrent mutations in hepatocellular carcinoma Z Kan, H Zheng, X Liu, S Li, TD Barber, Z Gong, H Gao, K Hao, ... Genome research 23 (9), 1422-1433, 2013 | 522 | 2013 |
| Chromatin connectivity maps reveal dynamic promoter–enhancer long-range associations Y Zhang, CH Wong, RY Birnbaum, G Li, R Favaro, CY Ngan, J Lim, E Tai, ... Nature 504 (7479), 306-310, 2013 | 456 | 2013 |
| Jmjd3 contributes to the control of gene expression in LPS‐activated macrophages F De Santa, V Narang, ZH Yap, BK Tusi, T Burgold, L Austenaa, G Bucci, ... The EMBO journal 28 (21), 3341-3352, 2009 | 446 | 2009 |
| Genomic portrait of resectable hepatocellular carcinomas: Implications of RB1 and FGF19 aberrations for patient stratification SM Ahn, SJ Jang, JH Shim, D Kim, SM Hong, CO Sung, D Baek, F Haq, ... Hepatology 60 (6), 1972-1982, 2014 | 378 | 2014 |
| Evaluation of methods for modeling transcription factor sequence specificity MT Weirauch, A Cote, R Norel, M Annala, Y Zhao, TR Riley, ... Nature biotechnology 31 (2), 126-134, 2013 | 365 | 2013 |
| Telomerase directly regulates NF-κB-dependent transcription A Ghosh, G Saginc, SC Leow, E Khattar, EM Shin, TD Yan, M Wong, ... Nature cell biology 14 (12), 1270-1281, 2012 | 338 | 2012 |
| Gene identification signature (GIS) analysis for transcriptome characterization and genome annotation P Ng, CL Wei, WK Sung, KP Chiu, L Lipovich, CC Ang, S Gupta, ... Nature methods 2 (2), 105-111, 2005 | 335 | 2005 |
| ChIA-PET tool for comprehensive chromatin interaction analysis with paired-end tag sequencing G Li, MJ Fullwood, H Xu, FH Mulawadi, S Velkov, V Vega, PN Ariyaratne, ... Genome biology 11, 1-13, 2010 | 319 | 2010 |
Kunihiko SadakaneProfessor at Department of Mathematical Informatics, The University of TokyoVerified email at mist.i.u-tokyo.ac.jp
