Luca Ciandrini
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Ribosome traffic on mRNAs maps to gene ontology: genome-wide quantification of translation initiation rates and polysome size regulation
L Ciandrini, I Stansfield, MC Romano
PLoS computational biology 9 (1), e1002866, 2013
Unraveling molecular interactions in liquid–liquid phase separation of disordered proteins by atomistic simulations
M Paloni, R Bailly, L Ciandrini, A Barducci
The Journal of Physical Chemistry B 124 (41), 9009-9016, 2020
Role of the particle’s stepping cycle in an asymmetric exclusion process: a model of mRNA translation
L Ciandrini, I Stansfield, MC Romano
Physical Review E 81 (5), 051904, 2010
Mixed population of competing totally asymmetric simple exclusion processes with a shared reservoir of particles
P Greulich, L Ciandrini, RJ Allen, MC Romano
Physical Review E 85 (1), 011142, 2012
Gene length as a regulator for ribosome recruitment and protein synthesis: theoretical insights
LD Fernandes, APS de Moura, L Ciandrini
Scientific Reports 7, 17409, 2017
A yeast tRNA mutant that causes pseudohyphal growth exhibits reduced rates of CAG codon translation
AJ Kemp, R Betney, L Ciandrini, ACM Schwenger, MC Romano, ...
Molecular microbiology 87 (2), 284-300, 2013
Motor protein traffic regulation by supply–demand balance of resources
L Ciandrini, I Neri, JC Walter, O Dauloudet, A Parmeggiani
Physical biology 11 (5), 056006, 2014
Deciphering mRNA Sequence Determinants of Protein Production Rate
J Szavits-Nossan, L Ciandrini, MC Romano
Physical Review Letters 120, 128101, 2018
Transport on a lattice with dynamical defects
F Turci, A Parmeggiani, E Pitard, MC Romano, L Ciandrini
Physical Review E 87 (1), 012705, 2013
Inferring efficiency of translation initiation and elongation from ribosome profiling
J Szavits-Nossan, L Ciandrini
Nucleic Acids Research 48 (17),, 2020
Identification of the mRNA targets of tRNA-specific regulation using genome-wide simulation of translation
B Gorgoni, L Ciandrini, MR McFarland, MC Romano, I Stansfield
Nucleic acids research 44 (19), 9231-9244, 2016
Stepping and crowding of molecular motors: statistical kinetics from an exclusion process perspective
L Ciandrini, MC Romano, A Parmeggiani
Biophysical Journal 107 (5), 1176–1184, 2014
Rational programming of history-dependent logic in cellular populations
A Z˙˝iga, S Guiziou, P Mayonove, ZB Meriem, M Camacho, V Moreau, ...
Nature Communications 11 (1), 1-14, 2020
Multiple phase transitions in a system of exclusion processes with limited reservoirs of particles and fuel carriers
CA Brackley, L Ciandrini, MC Romano
Journal of Statistical Mechanics: Theory and Experiment 2012 (03), P03002, 2012
Protein degradation sets the fraction of active ribosomes at vanishing growth
L Calabrese, J Grilli, M Osella, CP Kempes, M Cosentino Lagomarsino, ...
PLOS Computational Biology 18 (5), e1010059, 2022
Power series solution of the inhomogeneous exclusion process
J Szavits-Nossan, MC Romano, L Ciandrini
Physical Review E 97, 052139, 2018
Driven transport on a flexible polymer with particle recycling: a model inspired by transcription and translation
LD Fernandes, L Ciandrini
Physical Review E 99 (5), 052409, 2019
Feedback topology and XOR-dynamics in Boolean networks with varying input structure
L Ciandrini, C Maffi, A Motta, B Bassetti, MC Lagomarsino
Physical Review E 80 (2), 026122, 2009
How total mRNA influences cell growth
L Calabrese, L Ciandrini, M Cosentino Lagomarsino
Proceedings of the National Academy of Sciences 121 (21), e2400679121, 2024
An equilibrium model for ribosome competition
PS Rogalla, TJ Rudge, L Ciandrini
Physical Biology 17 (1), 015002, 2019
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