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Sarah Keating
Sarah Keating
Verified email at ucl.ac.uk
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Year
A community-driven global reconstruction of human metabolism
I Thiele, N Swainston, RMT Fleming, A Hoppe, S Sahoo, MK Aurich, ...
Nature biotechnology 31 (5), 419-425, 2013
10892013
Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v. 3.0
L Heirendt, S Arreckx, T Pfau, SN Mendoza, A Richelle, A Heinken, ...
Nature protocols 14 (3), 639-702, 2019
7172019
LibSBML: an API library for SBML
BJ Bornstein, SM Keating, A Jouraku, M Hucka
Bioinformatics 24 (6), 880-881, 2008
4512008
Evolving a lingua franca and associated software infrastructure for computational systems biology: the Systems Biology Markup Language (SBML) project
M Hucka, A Finney, BJ Bornstein, SM Keating, BE Shapiro, J Matthews, ...
Systems biology 1 (1), 41-53, 2004
3182004
BioModels: ten-year anniversary
V Chelliah, N Juty, I Ajmera, R Ali, M Dumousseau, M Glont, M Hucka, ...
Nucleic acids research 43 (D1), D542-D548, 2015
3042015
Controlled vocabularies and semantics in systems biology
M Courtot, N Juty, C Knüpfer, D Waltemath, A Zhukova, A Dräger, ...
Molecular systems biology 7 (1), 543, 2011
2982011
SBMLToolbox: an SBML toolbox for MATLAB users
SM Keating, BJ Bornstein, A Finney, M Hucka
Bioinformatics 22 (10), 1275-1277, 2006
1742006
BioModels—15 years of sharing computational models in life science
RS Malik-Sheriff, M Glont, TVN Nguyen, K Tiwari, MG Roberts, A Xavier, ...
Nucleic acids research 48 (D1), D407-D415, 2020
1712020
SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools
C Chaouiya, D Bérenguier, SM Keating, A Naldi, MP Van Iersel, ...
BMC systems biology 7 (1), 1-15, 2013
1662013
Path2Models: large-scale generation of computational models from biochemical pathway maps
F Büchel, N Rodriguez, N Swainston, C Wrzodek, T Czauderna, R Keller, ...
BMC systems biology 7, 1-19, 2013
1592013
The systems biology markup language (SBML): Language specification for level 3 version 1 core
L Smith, D Wilkinson, M Hucka, F Bergmann, S Hoops, S Keating, S Sahle, ...
Nature Precedings, 1-1, 2010
147*2010
SBML Level 3: an extensible format for the exchange and reuse of biological models
SM Keating, D Waltemath, M König, F Zhang, A Dräger, C Chaouiya, ...
Molecular systems biology 16 (8), e9110, 2020
1232020
Systems biology markup language (SBML) level 2: Structures and facilities for model definitions
M Hucka, S Hoops, S Keating, N Le Novère, S Sahle, D Wilkinson
Nature Precedings, 1-1, 2008
892008
BioModels: content, features, functionality, and use
N Juty, R Ali, M Glont, S Keating, N Rodriguez, MJ Swat, SM Wimalaratne, ...
CPT: pharmacometrics & systems pharmacology 4 (2), 55-68, 2015
802015
Wikidata as a knowledge graph for the life sciences
A Waagmeester, G Stupp, S Burgstaller-Muehlbacher, BM Good, M Griffith, ...
Elife 9, e52614, 2020
752020
The systems biology markup language (SBML): language specification for level 3 version 2 core
M Hucka, FT Bergmann, A Dräger, S Hoops, SM Keating, N Le Novère, ...
Journal of integrative bioinformatics 15 (1), 2018
662018
The systems biology markup language (SBML): language specification for level 3 version 2 core release 2
M Hucka, FT Bergmann, C Chaouiya, A Dräger, S Hoops, SM Keating, ...
Journal of integrative bioinformatics 16 (2), 2019
602019
The systems biology markup language (SBML): language specification for level 3 version 1 core (release 1 candidate)
M Hucka, F Bergmann, S Hoops, S Keating, S Sahle, D Wilkinson
Nature Precedings, 1-1, 2010
342010
Specifications of standards in systems and synthetic biology: status and developments in 2020
F Schreiber, B Sommer, T Czauderna, M Golebiewski, TE Gorochowski, ...
Journal of integrative bioinformatics 17 (2-3), 2020
312020
Software infrastructure for effective communication and reuse of computational models
A Finney, M Hucka, BJ Bornstein, SM Keating, BE Shapiro, J Matthews, ...
MIT Press, 2006
272006
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Articles 1–20