| A fast and agnostic method for bacterial genome-wide association studies: Bridging the gap between k-mers and genetic events M Jaillard, L Lima, M Tournoud, P Mahé, A Van Belkum, V Lacroix, ... PLoS genetics 14 (11), e1007758, 2018 | 179 | 2018 |
| Comparative assessment of long-read error correction software applied to Nanopore RNA-sequencing data L Lima, C Marchet, S Caboche, C Da Silva, B Istace, JM Aury, H Touzet, ... Briefings in bioinformatics, 2019 | 41 | 2019 |
| Complementarity of assembly-first and mapping-first approaches for alternative splicing annotation and differential analysis from RNAseq data C Benoit-Pilven, C Marchet, E Chautard, L Lima, MP Lambert, ... Scientific reports 8 (1), 4307, 2018 | 37 | 2018 |
| Playing hide and seek with repeats in local and global de novo transcriptome assembly of short RNA-seq reads L Lima, B Sinaimeri, G Sacomoto, H Lopez-Maestre, C Marchet, V Miele, ... Algorithms for molecular biology 12 (1), 2, 2017 | 22 | 2017 |
| Representing genetic determinants in bacterial GWAS with compacted de bruijn graphs M Jaillard, M Tournoud, L Lima, V Lacroix, JB Veyrieras, L Jacob bioRxiv, 113563, 2017 | 10 | 2017 |
| On Bubble Generators in Directed Graphs V Acuna, R Grossi, GF Italiano, L Lima, R Rizzi, G Sacomoto, MF Sagot, ... International Workshop on Graph-Theoretic Concepts in Computer Science, 18-31, 2017 | 8 | 2017 |
| Comparative assessment of long-read error-correction software applied to RNA-sequencing data LIS de Lima, C Marchet, S Caboche, C Da Silva, B Istace, JM Aury, ... bioRxiv, 476622, 2018 | 7 | 2018 |
| The Chain Alignment Problem L Lima, SS Adi International Conference on Computational Science, 17-30, 2019 | 1 | 2019 |
| Annotation and differential analysis of alternative splicing using de novo assembly of RNAseq data C Benoit-Pilven, C Marchet, E Chautard, L Lima, MP Lambert, ... | 1 | 2017 |
| A 3-Approximation Algorithm for the Multiple Spliced Alignment Problem and Its Application to the Gene Prediction Task RB Mazaro, LIS de Lima, SS Adi International Symposium on String Processing and Information Retrieval, 129-138, 2014 | | 2014 |
| O problema do alinhamento de segmentos LIS Lima | | 2013 |
| Gene Prediction by Segment Alignment LIS de Lima, SS Adi | | |
