Shujun Ou
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LTR_retriever: a highly accurate and sensitive program for identification of long terminal repeat retrotransposons
S Ou, N Jiang
Plant physiology 176 (2), 1410-1422, 2018
Variation in NRT1.1B contributes to nitrate-use divergence between rice subspecies
B Hu, W Wang, S Ou, J Tang, H Li, R Che, Z Zhang, X Chai, H Wang, ...
Nature Genetics 47 (7), 834-838, 2015
Benchmarking transposable element annotation methods for creation of a streamlined, comprehensive pipeline
S Ou, W Su, Y Liao, K Chougule, JRA Agda, AJ Hellinga, CSB Lugo, ...
Genome Biology 20 (1), 1-18, 2019
Origin and evolution of the octoploid strawberry genome
PP Edger, TJ Poorten, R VanBuren, MA Hardigan, M Colle, MR McKain, ...
Nature genetics 51 (3), 541-547, 2019
OsNAP connects abscisic acid and leaf senescence by fine-tuning abscisic acid biosynthesis and directly targeting senescence-associated genes in rice
C Liang, Y Wang, Y Zhu, J Tang, B Hu, L Liu, S Ou, H Wu, X Sun, J Chu, ...
Proceedings of the National Academy of Sciences 111 (27), 10013-10018, 2014
Assessing genome assembly quality using the LTR Assembly Index (LAI)
S Ou, J Chen, N Jiang
Nucleic acids research 46 (21), e126-e126, 2018
OsbZIP71, a bZIP transcription factor, confers salinity and drought tolerance in rice
C Liu, B Mao, S Ou, W Wang, L Liu, Y Wu, C Chu, X Wang
Plant molecular biology 84, 19-36, 2014
De novo assembly, annotation, and comparative analysis of 26 diverse maize genomes
MB Hufford, AS Seetharam, MR Woodhouse, KM Chougule, S Ou, J Liu, ...
Science 373 (6555), 655-662, 2021
Pan-genome analysis of 33 genetically diverse rice accessions reveals hidden genomic variations
P Qin, H Lu, H Du, H Wang, W Chen, Z Chen, Q He, S Ou, H Zhang, X Li, ...
Cell 184 (13), 3542-3558. e16, 2021
Expression of the nitrate transporter gene OsNRT1. 1A/OsNPF6. 3 confers high yield and early maturation in rice
W Wang, B Hu, D Yuan, Y Liu, R Che, Y Hu, S Ou, Y Liu, Z Zhang, ...
The Plant Cell 30 (3), 638-651, 2018
Genomic basis of geographical adaptation to soil nitrogen in rice
Y Liu, H Wang, Z Jiang, W Wang, R Xu, Q Wang, Z Zhang, A Li, Y Liang, ...
Nature 590 (7847), 600-605, 2021
Single-molecule sequencing and optical mapping yields an improved genome of woodland strawberry (Fragaria vesca) with chromosome-scale contiguity
PP Edger, R VanBuren, M Colle, TJ Poorten, CM Wai, CE Niederhuth, ...
Gigascience 7 (2), gix124, 2018
Automated assembly scaffolding using RagTag elevates a new tomato system for high-throughput genome editing
M Alonge, L Lebeigle, M Kirsche, K Jenike, S Ou, S Aganezov, X Wang, ...
Genome biology 23 (1), 1-19, 2022
Early selection of bZIP73 facilitated adaptation of japonica rice to cold climates
C Liu*, S Ou*, B Mao, J Tang, W Wang, H Wang, S Cao, MR Schläppi, ...
Nature communications 9 (1), 1-12, 2018
Haplotype-phased genome and evolution of phytonutrient pathways of tetraploid blueberry
M Colle, CP Leisner, CM Wai, S Ou, KA Bird, J Wang, JH Wisecaver, ...
GigaScience 8 (3), giz012, 2019
How the pan-genome is changing crop genomics and improvement
R Della Coletta, Y Qiu, S Ou, MB Hufford, CN Hirsch
Genome biology 22 (1), 1-19, 2021
Construction of a chromosome-scale long-read reference genome assembly for potato
GM Pham, JP Hamilton, JC Wood, JT Burke, H Zhao, B Vaillancourt, S Ou, ...
Gigascience 9 (9), giaa100, 2020
Variations in CYP78A13 coding region influence grain size and yield in rice
F Xu, J Fang, S Ou, S Gao, F Zhang, L Du, Y Xiao, H Wang, X Sun, J Chu, ...
Plant, cell & environment 38 (4), 800-811, 2015
LTR_FINDER_parallel: parallelization of LTR_FINDER enabling rapid identification of long terminal repeat retrotransposons
S Ou, N Jiang
Mobile DNA 10 (1), 1-3, 2019
Gapless assembly of maize chromosomes using long-read technologies
J Liu, AS Seetharam, K Chougule, S Ou, KW Swentowsky, JI Gent, ...
Genome Biology 21 (1), 1-17, 2020
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