| Pfam: the protein families database RD Finn, A Bateman, J Clements, P Coggill, RY Eberhardt, SR Eddy, ... Nucleic acids research 42 (D1), D222-D230, 2013 | 12420* | 2013 |
| Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes A Krogh, BÈ Larsson, G Von Heijne, ELL Sonnhammer Journal of molecular biology 305 (3), 567-580, 2001 | 9422 | 2001 |
| The Pfam protein families database A Bateman, L Coin, R Durbin, RD Finn, V Hollich, S Griffiths‐Jones, ... Nucleic acids research 32 (suppl_1), D138-D141, 2004 | 3482 | 2004 |
| A hidden Markov model for predicting transmembrane helices in protein sequences. ELL Sonnhammer, G Von Heijne, A Krogh Ismb 6, 175-182, 1998 | 2493 | 1998 |
| The Pfam protein families database A Bateman, E Birney, L Cerruti, R Durbin, L Etwiller, SR Eddy, ... Nucleic acids research 30 (1), 276-280, 2002 | 2433 | 2002 |
| Pfam: clans, web tools and services RD Finn, J Mistry, B Schuster-Böckler, S Griffiths-Jones, V Hollich, ... Nucleic acids research 34 (suppl_1), D247-D251, 2006 | 2334 | 2006 |
| A combined transmembrane topology and signal peptide prediction method L Käll, A Krogh, ELL Sonnhammer Journal of molecular biology 338 (5), 1027-1036, 2004 | 1784 | 2004 |
| 2.2 Mb of contiguous nucleotide sequence from chromosome III of C. elegans R Wilson, R Ainscough, K Anderson, C Baynes, M Berks, J Bonfield, ... Nature 368 (6466), 32-38, 1994 | 1695 | 1994 |
| The Pfam protein families database A Bateman, E Birney, R Durbin, SR Eddy, KL Howe, ELL Sonnhammer Nucleic acids research 28 (1), 263-266, 2000 | 1412 | 2000 |
| Automatic clustering of orthologs and in-paralogs from pairwise species comparisons M Remm, CEV Storm, ELL Sonnhammer Journal of molecular biology 314 (5), 1041-1052, 2001 | 1356 | 2001 |
| Pfam: a comprehensive database of protein domain families based on seed alignments ELL Sonnhammer, SR Eddy, R Durbin Proteins: Structure, Function, and Bioinformatics 28 (3), 405-420, 1997 | 1281 | 1997 |
| Advantages of combined transmembrane topology and signal peptide prediction—the Phobius web server L Käll, A Krogh, ELL Sonnhammer Nucleic acids research 35 (suppl_2), W429-W432, 2007 | 938 | 2007 |
| Pfam: multiple sequence alignments and HMM-profiles of protein domains ELL Sonnhammer, SR Eddy, E Birney, A Bateman, R Durbin Nucleic acids research 26 (1), 320-322, 1998 | 809 | 1998 |
| A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis ELL Sonnhammer, R Durbin Gene 167 (1-2), GC1-GC10, 1995 | 761 | 1995 |
| Inparanoid: a comprehensive database of eukaryotic orthologs KP O'Brien, M Remm, ELL Sonnhammer Nucleic acids research 33 (suppl_1), D476-D480, 2005 | 755 | 2005 |
| Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteins A Bateman, E Birney, R Durbin, SR Eddy, RD Finn, ELL Sonnhammer Nucleic acids research 27 (1), 260-262, 1999 | 637 | 1999 |
| Kalign–an accurate and fast multiple sequence alignment algorithm T Lassmann, ELL Sonnhammer BMC bioinformatics 6 (1), 298, 2005 | 630 | 2005 |
| InParanoid 7: new algorithms and tools for eukaryotic orthology analysis G Östlund, T Schmitt, K Forslund, T Köstler, DN Messina, S Roopra, ... Nucleic acids research 38 (suppl_1), D196-D203, 2009 | 606 | 2009 |
| Orthology, paralogy and proposed classification for paralog subtypes ELL Sonnhammer, EV Koonin TRENDS in Genetics 18 (12), 619-620, 2002 | 409 | 2002 |
| Database issue A Bateman, L Coin, R Durbin, RD Finn, V Hollich, S Griffiths-Jones, ... Nucleic Acids Res 32, D138-D141, 2004 | 393 | 2004 |
