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Evguenia Kopylova
Evguenia Kopylova
Host-microbiome data analysis | Managing Director, Clarity Genomics
Verified email at clarity-genomics.com - Homepage
Title
Cited by
Cited by
Year
SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data
E Kopylova, L Noé, H Touzet
Bioinformatics 28 (24), 3211-3217, 2012
17522012
A communal catalogue reveals Earth’s multiscale microbial diversity
LR Thompson, JG Sanders, D McDonald, A Amir, J Ladau, KJ Locey, ...
Nature 551 (7681), 457-463, 2017
15542017
Deblur rapidly resolves single-nucleotide community sequence patterns
A Amir, D McDonald, JA Navas-Molina, E Kopylova, JT Morton, Z Zech Xu, ...
MSystems 2 (2), e00191-16, 2017
9012017
Microbiome analyses of blood and tissues suggest cancer diagnostic approach
GD Poore, E Kopylova, Q Zhu, C Carpenter, S Fraraccio, S Wandro, ...
Nature 579 (7800), 567-574, 2020
3602020
Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0
F Asnicar, AM Thomas, F Beghini, C Mengoni, S Manara, P Manghi, ...
Nature communications 11 (1), 1-10, 2020
1802020
Deblur rapidly resolves single-nucleotide community sequence patterns. mSystems 2: e00191-16
A Amir, D McDonald, JA Navas-Molina, E Kopylova, JT Morton, Z Zech Xu, ...
1612017
Stability of operational taxonomic units: an important but neglected property for analyzing microbial diversity
Y He, JG Caporaso, XT Jiang, HF Sheng, SM Huse, JR Rideout, ...
Microbiome 3 (1), 1-10, 2015
1532015
Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea
Q Zhu, U Mai, W Pfeiffer, S Janssen, F Asnicar, JG Sanders, ...
Nature communications 10 (1), 1-14, 2019
1342019
Open-source sequence clustering methods improve the state of the art
E Kopylova, JA Navas-Molina, C Mercier, ZZ Xu, F Mahé, Y He, HW Zhou, ...
MSystems 1 (1), e00003-15, 2016
1302016
Origin of microbial biomineralization and magnetotaxis during the Archean
W Lin, GA Paterson, Q Zhu, Y Wang, E Kopylova, Y Li, R Knight, ...
Proceedings of the National Academy of Sciences 114 (9), 2171-2176, 2017
932017
A comparison of index-based Lempel-Ziv LZ77 factorization algorithms
A Al-Hafeedh, M Crochemore, L Ilie, E Kopylova, WF Smyth, G Tischler, ...
ACM Computing Surveys (CSUR) 45 (1), 1-17, 2012
372012
A standardized, extensible framework for optimizing classification improves marker-gene taxonomic assignments
NA Bokulich, JR Rideout, E Kopylova, E Bolyen, J Patnode, Z Ellett, ...
PeerJ PrePrints 3, e934v2, 2015
292015
The three squares lemma revisited
E Kopylova, WF Smyth
Journal of Discrete Algorithms 11, 3-14, 2012
242012
Reply to Wang and Chen: an ancient origin of magnetotactic bacteria
W Lin, GA Paterson, Q Zhu, Y Wang, E Kopylova, Y Li, R Knight, ...
Proceedings of the National Academy of Sciences 114 (26), E5019-E5020, 2017
82017
Deciphering metatranscriptomic data
E Kopylova, L Noé, CD Silva, JF Berthelot, A Alberti, JM Aury, H Touzet
RNA Bioinformatics, 279-291, 2015
62015
Sortmerna 2: ribosomal rna classification for taxonomic assignation
E Kopylova, L Noé, P Pericard, M Salson, H Touzet
Workshop on recent computational advances in metagenomics, ECCB 2014, 2014
62014
B. infantis EVC001 Is Well-Tolerated and Improves Human Milk Oligosaccharide Utilization in Preterm Infants in the Neonatal Intensive Care Unit
S Bajorek, RM Duar, M Corrigan, C Matrone, KA Winn, S Norman, ...
Frontiers in pediatrics, 1560, 2022
22022
New algorithmic and bioinformatic approaches for the analysis of data from high throughput sequencing
E Kopylova
Université des Sciences et Technologie de Lille-Lille I, 2013
22013
Algorithmes bio-informatiques pour l'analyse de données de séquençage à haut débit
E Kopylova
12013
New software for mapping high-throughput reads for genomic and metagenomic data
E Kopylova, L Noé, M Salson, H Touzet
Invited Talks, 25, 2013
2013
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