Gydo Van Zundert
Gydo Van Zundert
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The HADDOCK2. 2 web server: user-friendly integrative modeling of biomolecular complexes
GCP Van Zundert, J Rodrigues, M Trellet, C Schmitz, PL Kastritis, ...
Journal of molecular biology 428 (4), 720-725, 2016
6872016
Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: A CASP‐CAPRI experiment
MF Lensink, S Velankar, A Kryshtafovych, SY Huang, ...
Proteins: Structure, Function, and Bioinformatics 84, 323-348, 2016
1032016
Probing a cell-embedded megadalton protein complex by DNP-supported solid-state NMR
M Kaplan, A Cukkemane, GCP Van Zundert, S Narasimhan, M DaniŽls, ...
Nature methods 12 (7), 649-652, 2015
1012015
Integrative modeling of biomolecular complexes: HADDOCKing with cryo-electron microscopy data
GCP van Zundert, ASJ Melquiond, AMJJ Bonvin
Structure 23 (5), 949-960, 2015
502015
Defining the limits of homology modeling in information‐driven protein docking
J Rodrigues, ASJ Melquiond, E Karaca, M Trellet, M Van Dijk, ...
Proteins: Structure, Function, and Bioinformatics 81 (12), 2119-2128, 2013
502013
IR Spectroscopy of Isolated Neutral and Protonated Adenine and 9‐Methyladenine
GCP van Zundert, S Jaeqx, G Berden, JM Bakker, K Kleinermanns, ...
ChemPhysChem 12 (10), 1921-1927, 2011
372011
Modeling protein–protein complexes using the HADDOCK webserver “modeling protein complexes with HADDOCK”
GCP van Zundert, AMJJ Bonvin
Protein Structure Prediction, 163-179, 2014
322014
DisVis: quantifying and visualizing accessible interaction space of distance-restrained biomolecular complexes
GCP Van Zundert, AMJJ Bonvin
Bioinformatics 31 (19), 3222-3224, 2015
302015
The DisVis and PowerFit web servers: explorative and integrative modeling of biomolecular complexes
GCP van Zundert, M Trellet, J Schaarschmidt, Z Kurkcuoglu, M David, ...
Journal of molecular biology 429 (3), 399-407, 2017
222017
Fast and sensitive rigid-body fitting into cryo-EM density maps with PowerFit
G Cp van Zundert, A Mjj Bonvin
AIMS Biophysics 2 (2), 73-87, 2015
212015
qFit-ligand Reveals Widespread Conformational Heterogeneity of Drug-Like Molecules in X-Ray Electron Density Maps
GC Van Zundert, BM Hudson, SHP de Oliveira, DA Keedy, R Fonseca, ...
Journal of medicinal chemistry 61 (24), 11183-11198, 2018
172018
Sense and simplicity in HADDOCK scoring: Lessons from CASP‐CAPRI round 1
A Vangone, J Rodrigues, LC Xue, GCP van Zundert, C Geng, ...
Proteins: Structure, Function, and Bioinformatics 85 (3), 417-423, 2017
162017
Structural basis of GM-CSF and IL-2 sequestration by the viral decoy receptor GIF
J Felix, E Kandiah, S De Munck, Y Bloch, GCP Van Zundert, K Pauwels, ...
Nature communications 7 (1), 1-13, 2016
12*2016
Defining the limits and reliability of rigid-body fitting in cryo-EM maps using multi-scale image pyramids
GCP Van Zundert, A Bonvin
Journal of structural biology 195 (2), 252-258, 2016
92016
Sense and simplicity in HADDOCK scoring: lessons from CASP‐CAPRI (page 418)
A Vangone, J Rodrigues, LC Xue, GCP van Zundert, C Geng, ...
Proteins 85 (8), 1589, 2017
32017
GemSpot: A Pipeline for Robust Modeling of Ligands into Cryo-EM Maps
MJ Robertson, GCP Van Zundert, K Borrelli, G Skiniotis
Structure, 2020
22020
Synthesis and Mechanism of Action of Group a Streptogramin Antibiotics That Overcome Resistance
Q Li, J Pellegrino, DJ Lee, A Tran, R Wang, J Park, K Ji, D Chow, N Zhang, ...
ChemRxiv, 2019
12019
Macromolecular refinement of X-ray and cryo-electron microscopy structures with Phenix/OPLS3e for improved structure and ligand quality
GCP van Zundert, NW Moriarty, OV Sobolev, PD Adams, KW Borrelli
BioRxiv, 2020
2020
Protein–Protein Modeling Using Cryo-EM Restraints
M Trellet, G van Zundert, AMJJ Bonvin
Structural Bioinformatics, 145-162, 2020
2020
Better-than-average-effect and the influence of feedback on this effect in 4-to-6-year olds
GC van Zundert
2019
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Artikelen 1–20