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Joshua A Shapiro
Joshua A Shapiro
Childhood Cancer Data Lab, Alex's Lemonade Stand
Geverifieerd e-mailadres voor ccdatalab.org
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Comprehensive polymorphism survey elucidates population structure of Saccharomyces cerevisiae
J Schacherer, JA Shapiro, DM Ruderfer, L Kruglyak
Nature 458 (7236), 342-345, 2009
5082009
Dissection of genetically complex traits with extremely large pools of yeast segregants
IM Ehrenreich, N Torabi, Y Jia, J Kent, S Martis, JA Shapiro, D Gresham, ...
Nature 464 (7291), 1039-1042, 2010
4772010
Chromosome-scale selective sweeps shape Caenorhabditis elegans genomic diversity
EC Andersen, JP Gerke, JA Shapiro, JR Crissman, R Ghosh, JS Bloom, ...
Nature genetics 44 (3), 285-290, 2012
4292012
Adaptive genic evolution in the Drosophila genomes
JA Shapiro, W Huang, C Zhang, MJ Hubisz, J Lu, DA Turissini, S Fang, ...
Proceedings of the National Academy of Sciences 104 (7), 2271-2276, 2007
2522007
Natural variation in a chloride channel subunit confers avermectin resistance in C. elegans
R Ghosh, EC Andersen, JA Shapiro, JP Gerke, L Kruglyak
Science 335 (6068), 574-578, 2012
1952012
Genome-wide misexpression of X-linked versus autosomal genes associated with hybrid male sterility
X Lu, JA Shapiro, CT Ting, Y Li, C Li, J Xu, H Huang, YJ Cheng, ...
Genome research 20 (8), 1097-1102, 2010
552010
Detecting novel low-abundant transcripts in Drosophila
S Lee, J Bao, G Zhou, J Shapiro, J Xu, RZ Shi, X Lu, T Clark, D Johnson, ...
Rna 11 (6), 939-946, 2005
452005
Macrophages in SHH subgroup medulloblastoma display dynamic heterogeneity that varies with treatment modality
MT Dang, MV Gonzalez, KS Gaonkar, KS Rathi, P Young, S Arif, L Zhai, ...
Cell reports 34 (13), 2021
322021
RNA-Seq Analysis Reveals a Six-Gene SoxR Regulon in Streptomyces coelicolor
N Naseer, JA Shapiro, M Chander
PLOS One, 2014
292014
Spermatid-specific promoter of the SP-10 gene functions as an insulator in somatic cells
PP Reddi, AN Shore, JA Shapiro, A Anderson, MH Stoler, KK Acharya
Developmental biology 262 (1), 173-182, 2003
292003
Decoupled differentiation of gene expression and coding sequence among Drosophila populations
MH Kohn, J Shapiro, CI Wu
Genes & genetic systems 83 (3), 265-273, 2008
262008
Understand the genomic diversity and evolution of fungal pathogen Candida glabrata by genome-wide analysis of genetic variations
X Guo, R Zhang, Y Li, Z Wang, OP Ishchuk, KM Ahmad, J Wee, J Piskur, ...
Methods 176, 82-90, 2020
162020
OpenPBTA: The Open Pediatric Brain Tumor Atlas
JA Shapiro, KS Gaonkar, SJ Spielman, CL Savonen, CJ Bethell, R Jin, ...
Cell genomics 3 (7), 2023
11*2023
OpenPBTA: an open pediatric brain tumor atlas
JA Shapiro, KS Gaonkar, CL Savonen, SJ Spielman, CJ Bethell, R Jin, ...
bioRxiv, 2022.09. 13.507832, 2022
62022
Draft Genome Sequence of Exiguobacterium sp. Strain BMC-KP, an Environmental Isolate from Bryn Mawr, Pennsylvania
P Hyson, JA Shapiro, MW Wien
Genome Announcements 3 (5), 10.1128/genomea. 01164-15, 2015
42015
OMIC-14. OPENPBTA: AN OPEN PEDIATRIC BRAIN TUMOR ATLAS
J Shapiro, C Savonen, C Bethell, K Gaonkar, Y Zhu, M Brown, N Duong, ...
Neuro-Oncology 23 (Supplement_1), i40-i40, 2021
12021
The Single-cell Pediatric Cancer Atlas: Open-source data and tools for single-cell transcriptomics of pediatric tumors
AG Hawkins, JA Shapiro, SJ Spielman, DS Mejia, DV Prasad, N Ichihara, ...
Cancer Research 84 (6_Supplement), 2859-2859, 2024
2024
Erratum: Macrophages in SHH subgroup medulloblastoma display dynamic heterogeneity that varies with treatment modality (Cell Reports (2021) 34 (13),(S221112472100231X),(10.1016 …
MT Dang, MV Gonzalez, KS Gaonkar, KS Rathi, P Young, S Arif, L Zhai, ...
Cell Reports 42 (6), 112600, 2023
2023
Tumor type and cell type-specific gene expression alterations in diverse pediatric central nervous system tumors identified using single nuclei RNA-seq
MK Lee, N Azizgolshani, JA Shapiro, LN Nguyen, FW Kolling, GJ Zanazzi, ...
Research Square, 2023
2023
Single-cell transcriptomic profile reveals macrophage heterogeneity in medulloblastoma and their treatment-dependent recruitment
MT Dang, M Gonzalez, KS Gaonkar, KS Rathi, P Young, S Arif, L Zhai, ...
bioRxiv, 2020.02. 12.945642, 2020
2020
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Artikelen 1–20