| Critical assessment of metagenome interpretation—a benchmark of metagenomics software A Sczyrba, P Hofmann, P Belmann, D Koslicki, S Janssen, J Dröge, ... Nature methods 14 (11), 1063-1071, 2017 | 359 | 2017 |
| The Sol Genomics Network (SGN)—from genotype to phenotype to breeding N Fernandez-Pozo, N Menda, JD Edwards, S Saha, IY Tecle, SR Strickler, ... Nucleic acids research 43 (D1), D1036-D1041, 2015 | 336 | 2015 |
| Empirical comparison of ab initio repeat finding programs S Saha, S Bridges, ZV Magbanua, DG Peterson Nucleic acids research 36 (7), 2284-2294, 2008 | 185 | 2008 |
| Traits of selected Clostridium strains for syngas fermentation to ethanol ME Martin, H Richter, S Saha, LT Angenent Biotechnology and bioengineering 113 (3), 531-539, 2016 | 68 | 2016 |
| Survey of endosymbionts in the Diaphorina citri metagenome and assembly of a Wolbachia wDi draft genome S Saha, WB Hunter, J Reese, JK Morgan, M Marutani-Hert, H Huang, ... PloS one 7 (11), e50067, 2012 | 65 | 2012 |
| Computational approaches and tools used in identification of dispersed repetitive DNA sequences S Saha, S Bridges, ZV Magbanua, DG Peterson Tropical Plant Biology 1 (1), 85-96, 2008 | 61 | 2008 |
| An annotated genetic map of loblolly pine based on microsatellite and cDNA markers CS Echt, S Saha, KV Krutovsky, K Wimalanathan, JE Erpelding, C Liang, ... BMC genetics 12 (1), 1-16, 2011 | 60 | 2011 |
| Combining 'omics and microscopy to visualize interactions between the Asian citrus psyllid vector and the Huanglongbing pathogen Candidatus Liberibacter … A Kruse, S Fattah-Hosseini, S Saha, R Johnson, ER Warwick, K Sturgeon, ... PloS one 12 (6), e0179531, 2017 | 55 | 2017 |
| Improved annotation of the insect vector of citrus greening disease: biocuration by a diverse genomics community S Saha, PS Hosmani, K Villalobos-Ayala, S Miller, T Shippy, M Flores, ... Database 2017, 2017 | 40 | 2017 |
| Characterization of the Asian citrus psyllid transcriptome J Reese, MK Christenson, N Leng, S Saha, B Cantarel, M Lindeberg, ... Journal of genomics 2, 54, 2014 | 38 | 2014 |
| Improved annotation of the insect vector of citrus greening disease: biocuration by a diverse genomics community S Saha, PS Hosmani, K Villalobos-Ayala, S Miller, T Shippy, M Flores, ... Database 2017, 2017 | 37 | 2017 |
| Comprehensive repeatome annotation reveals strong potential impact of repetitive elements on tomato ripening O Jouffroy, S Saha, L Mueller, H Quesneville, F Maumus BMC genomics 17 (1), 1-15, 2016 | 23 | 2016 |
| Microsatellite DNA in genomic survey sequences and UniGenes of loblolly pine CS Echt, S Saha, DL Deemer, CD Nelson Tree Genetics & Genomes 7 (4), 773-780, 2011 | 22 | 2011 |
| An improved de novo assembly and annotation of the tomato reference genome using single-molecule sequencing, Hi-C proximity ligation and optical maps PS Hosmani, M Flores-Gonzalez, H van de Geest, F Maumus, LV Bakker, ... bioRxiv, 767764, 2019 | 18 | 2019 |
| A quick guide for student-driven community genome annotation PS Hosmani, T Shippy, S Miller, JB Benoit, M Munoz-Torres, ... PLoS computational biology 15 (4), e1006682, 2019 | 17 | 2019 |
| The Ptr1 locus of Solanum lycopersicoides confers resistance to race 1 strains of Pseudomonas syringae pv. tomato and to Ralstonia pseudosolanacearum by recognizing the type … C Mazo-Molina, S Mainiero, SR Hind, CM Kraus, M Vachev, ... Molecular Plant-Microbe Interactions 32 (8), 949-960, 2019 | 12 | 2019 |
| Genome-Assisted Development of a Diagnostic Protocol for Distinguishing High Virulence Pseudomonas syringae pv. tomato Strains LA Jones, S Saha, A Collmer, CD Smart, M Lindeberg Plant disease 99 (4), 527-534, 2015 | 9 | 2015 |
| Longitudinal Transcriptomic, Proteomic, and Metabolomic Analyses of Citrus sinensis (L.) Osbeck Graft-Inoculated with “Candidatus Liberibacter asiaticus” EL Chin, JS Ramsey, DO Mishchuk, S Saha, E Foster, JD Chavez, ... Journal of proteome research 19 (2), 719-732, 2019 | 8 | 2019 |
| NCBI’s virus discovery Hackathon: Engaging research communities to identify cloud infrastructure requirements R Connor, R Brister, JP Buchmann, W Deboutte, R Edwards, ... Genes 10 (9), 714, 2019 | 7 | 2019 |
| Bound to succeed: Transcription factor binding-site prediction and its contribution to understanding virulence and environmental adaptation in bacterial plant pathogens S Saha, M Lindeberg Molecular plant-microbe interactions 26 (10), 1123-1130, 2013 | 7 | 2013 |
Lukas A. MuellerBoyce Thompson Institute for Plant ResearchVerified email at cornell.edu
