Surya Saha
Surya Saha
Boyce Thompson Institute
Verified email at - Homepage
Cited by
Cited by
Critical assessment of metagenome interpretation—a benchmark of metagenomics software
A Sczyrba, P Hofmann, P Belmann, D Koslicki, S Janssen, J Dröge, ...
Nature methods 14 (11), 1063-1071, 2017
The Sol Genomics Network (SGN)—from genotype to phenotype to breeding
N Fernandez-Pozo, N Menda, JD Edwards, S Saha, IY Tecle, SR Strickler, ...
Nucleic acids research 43 (D1), D1036-D1041, 2015
Empirical comparison of ab initio repeat finding programs
S Saha, S Bridges, ZV Magbanua, DG Peterson
Nucleic acids research 36 (7), 2284-2294, 2008
Traits of selected Clostridium strains for syngas fermentation to ethanol
ME Martin, H Richter, S Saha, LT Angenent
Biotechnology and bioengineering 113 (3), 531-539, 2016
Survey of endosymbionts in the Diaphorina citri metagenome and assembly of a Wolbachia wDi draft genome
S Saha, WB Hunter, J Reese, JK Morgan, M Marutani-Hert, H Huang, ...
PloS one 7 (11), e50067, 2012
Computational approaches and tools used in identification of dispersed repetitive DNA sequences
S Saha, S Bridges, ZV Magbanua, DG Peterson
Tropical Plant Biology 1 (1), 85-96, 2008
An annotated genetic map of loblolly pine based on microsatellite and cDNA markers
CS Echt, S Saha, KV Krutovsky, K Wimalanathan, JE Erpelding, C Liang, ...
BMC genetics 12 (1), 1-16, 2011
Combining 'omics and microscopy to visualize interactions between the Asian citrus psyllid vector and the Huanglongbing pathogen Candidatus Liberibacter …
A Kruse, S Fattah-Hosseini, S Saha, R Johnson, ER Warwick, K Sturgeon, ...
PloS one 12 (6), e0179531, 2017
Improved annotation of the insect vector of citrus greening disease: biocuration by a diverse genomics community
S Saha, PS Hosmani, K Villalobos-Ayala, S Miller, T Shippy, M Flores, ...
Database 2017, 2017
Characterization of the Asian citrus psyllid transcriptome
J Reese, MK Christenson, N Leng, S Saha, B Cantarel, M Lindeberg, ...
Journal of genomics 2, 54, 2014
Improved annotation of the insect vector of citrus greening disease: biocuration by a diverse genomics community
S Saha, PS Hosmani, K Villalobos-Ayala, S Miller, T Shippy, M Flores, ...
Database 2017, 2017
Comprehensive repeatome annotation reveals strong potential impact of repetitive elements on tomato ripening
O Jouffroy, S Saha, L Mueller, H Quesneville, F Maumus
BMC genomics 17 (1), 1-15, 2016
Microsatellite DNA in genomic survey sequences and UniGenes of loblolly pine
CS Echt, S Saha, DL Deemer, CD Nelson
Tree Genetics & Genomes 7 (4), 773-780, 2011
An improved de novo assembly and annotation of the tomato reference genome using single-molecule sequencing, Hi-C proximity ligation and optical maps
PS Hosmani, M Flores-Gonzalez, H van de Geest, F Maumus, LV Bakker, ...
bioRxiv, 767764, 2019
A quick guide for student-driven community genome annotation
PS Hosmani, T Shippy, S Miller, JB Benoit, M Munoz-Torres, ...
PLoS computational biology 15 (4), e1006682, 2019
The Ptr1 locus of Solanum lycopersicoides confers resistance to race 1 strains of Pseudomonas syringae pv. tomato and to Ralstonia pseudosolanacearum by recognizing the type …
C Mazo-Molina, S Mainiero, SR Hind, CM Kraus, M Vachev, ...
Molecular Plant-Microbe Interactions 32 (8), 949-960, 2019
Genome-Assisted Development of a Diagnostic Protocol for Distinguishing High Virulence Pseudomonas syringae pv. tomato Strains
LA Jones, S Saha, A Collmer, CD Smart, M Lindeberg
Plant disease 99 (4), 527-534, 2015
Longitudinal Transcriptomic, Proteomic, and Metabolomic Analyses of Citrus sinensis (L.) Osbeck Graft-Inoculated with “Candidatus Liberibacter asiaticus”
EL Chin, JS Ramsey, DO Mishchuk, S Saha, E Foster, JD Chavez, ...
Journal of proteome research 19 (2), 719-732, 2019
NCBI’s virus discovery Hackathon: Engaging research communities to identify cloud infrastructure requirements
R Connor, R Brister, JP Buchmann, W Deboutte, R Edwards, ...
Genes 10 (9), 714, 2019
Bound to succeed: Transcription factor binding-site prediction and its contribution to understanding virulence and environmental adaptation in bacterial plant pathogens
S Saha, M Lindeberg
Molecular plant-microbe interactions 26 (10), 1123-1130, 2013
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