Ole Lund
TitleCited byYear
Identification of acquired antimicrobial resistance genes
E Zankari, H Hasman, S Cosentino, M Vestergaard, S Rasmussen, ...
Journal of antimicrobial chemotherapy 67 (11), 2640-2644, 2012
17932012
Improved method for predicting linear B-cell epitopes
JEP Larsen, O Lund, M Nielsen
Immunome research 2 (1), 2, 2006
9502006
In silico detection and typing of plasmids using PlasmidFinder and plasmid multilocus sequence typing
A Carattoli, E Zankari, A García-Fernández, MV Larsen, O Lund, L Villa, ...
Antimicrobial agents and chemotherapy 58 (7), 3895-3903, 2014
9202014
Multilocus sequence typing of total-genome-sequenced bacteria
MV Larsen, S Cosentino, S Rasmussen, C Friis, H Hasman, RL Marvig, ...
Journal of clinical microbiology 50 (4), 1355-1361, 2012
8072012
Reliable prediction of T‐cell epitopes using neural networks with novel sequence representations
M Nielsen, C Lundegaard, P Worning, SL Lauemøller, K Lamberth, ...
Protein Science 12 (5), 1007-1017, 2003
7812003
An Aboriginal Australian genome reveals separate human dispersals into Asia
M Rasmussen, X Guo, Y Wang, KE Lohmueller, S Rasmussen, ...
Science 334 (6052), 94-98, 2011
6092011
NetMHC-3.0: accurate web accessible predictions of human, mouse and monkey MHC class I affinities for peptides of length 8–11
C Lundegaard, K Lamberth, M Harndahl, S Buus, O Lund, M Nielsen
Nucleic acids research 36 (suppl_2), W509-W512, 2008
5712008
NetOglyc: prediction of mucin type O-glycosylation sites based on sequence context and surface accessibility
JE Hansen, O Lund, N Tolstrup, AA Gooley, KL Williams, S Brunak
Glycoconjugate journal 15 (2), 115-130, 1998
5401998
Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes
HB Nielsen, M Almeida, AS Juncker, S Rasmussen, J Li, S Sunagawa, ...
Nature biotechnology 32 (8), 822, 2014
4922014
NetMHCpan, a method for MHC class I binding prediction beyond humans
I Hoof, B Peters, J Sidney, LE Pedersen, A Sette, O Lund, S Buus, ...
Immunogenetics 61 (1), 1, 2009
4902009
Real-time whole-genome sequencing for routine typing, surveillance, and outbreak detection of verotoxigenic Escherichia coli
KG Joensen, F Scheutz, O Lund, H Hasman, RS Kaas, EM Nielsen, ...
Journal of clinical microbiology 52 (5), 1501-1510, 2014
4722014
Prediction of residues in discontinuous B‐cell epitopes using protein 3D structures
P Haste Andersen, M Nielsen, O Lund
Protein Science 15 (11), 2558-2567, 2006
4562006
The immune epitope database and analysis resource: from vision to blueprint
B Peters, J Sidney, P Bourne, HH Bui, S Buus, G Doh, W Fleri, ...
PLoS biology 3 (3), e91, 2005
4122005
NetMHCpan, a method for quantitative predictions of peptide binding to any HLA-A and-B locus protein of known sequence
M Nielsen, C Lundegaard, T Blicher, K Lamberth, M Harndahl, S Justesen, ...
PloS one 2 (8), e796, 2007
4082007
Insights from 20 years of bacterial genome sequencing
M Land, L Hauser, SR Jun, I Nookaew, MR Leuze, TH Ahn, T Karpinets, ...
Functional & integrative genomics 15 (2), 141-161, 2015
3782015
NN-align. An artificial neural network-based alignment algorithm for MHC class II peptide binding prediction
M Nielsen, O Lund
BMC bioinformatics 10 (1), 296, 2009
3662009
Prediction of MHC class II binding affinity using SMM-align, a novel stabilization matrix alignment method
M Nielsen, C Lundegaard, O Lund
BMC bioinformatics 8 (1), 238, 2007
3592007
Peptide binding predictions for HLA DR, DP and DQ molecules
P Wang, J Sidney, Y Kim, A Sette, O Lund, M Nielsen, B Peters
BMC bioinformatics 11 (1), 568, 2010
3422010
CPHmodels-3.0—remote homology modeling using structure-guided sequence profiles
M Nielsen, C Lundegaard, O Lund, TN Petersen
Nucleic acids research 38 (suppl_2), W576-W581, 2010
3382010
The role of the proteasome in generating cytotoxic T-cell epitopes: insights obtained from improved predictions of proteasomal cleavage
M Nielsen, C Lundegaard, O Lund, C Keşmir
Immunogenetics 57 (1-2), 33-41, 2005
3242005
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