Nicolas Rodriguez
Nicolas Rodriguez
Senior Software Systems and Database Architect, Babraham Institute
Verified email at - Homepage
Cited by
Cited by
BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models
C Li, M Donizelli, N Rodriguez, H Dharuri, L Endler, V Chelliah, L Li, E He, ...
BMC systems biology 4 (1), 92, 2010
Database BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models
C Li, M Donizelli, N Rodriguez, H Dharuri, L Endler, V Chelliah, L Li, E He, ...
Controlled vocabularies and semantics in systems biology
M Courtot, N Juty, C Knüpfer, D Waltemath, A Zhukova, A Dräger, ...
Molecular systems biology 7 (1), 543, 2011
BioModels: ten-year anniversary
V Chelliah, N Juty, I Ajmera, R Ali, M Dumousseau, M Glont, M Hucka, ...
Nucleic acids research 43 (D1), D542-D548, 2015
SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools
C Chaouiya, D Bérenguier, SM Keating, A Naldi, MP Van Iersel, ...
BMC systems biology 7 (1), 135, 2013
Path2Models: large-scale generation of computational models from biochemical pathway maps
F Büchel, N Rodriguez, N Swainston, C Wrzodek, T Czauderna, R Keller, ...
BMC systems biology 7 (1), 116, 2013
COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project
FT Bergmann, R Adams, S Moodie, J Cooper, M Glont, M Golebiewski, ...
BMC bioinformatics 15 (1), 369, 2014
JSBML: a flexible Java library for working with SBML
A Dräger, N Rodriguez, M Dumousseau, A Dörr, C Wrzodek, N Le Novère, ...
Bioinformatics 27 (15), 2167-2168, 2011
BioModels: expanding horizons to include more modelling approaches and formats
M Glont, TVN Nguyen, M Graesslin, R Hälke, R Ali, J Schramm, ...
Nucleic acids research 46 (D1), D1248-D1253, 2017
BioModels: Content, Features, Functionality, and Use
N Juty, R Ali, M Glont, S Keating, N Rodriguez, MJ Swat, SM Wimalaratne, ...
CPT: Pharmacometrics & Systems Pharmacology 4 (2), 1-14, 2015
PANDIT: an evolution-centric database of protein and associated nucleotide domains with inferred trees
S Whelan, PIW de Bakker, E Quevillon, N Rodriguez, N Goldman
Nucleic Acids Research 34 (suppl 1), D327-D331, 2006
Designing and encoding models for synthetic biology
L Endler, N Rodriguez, N Juty, V Chelliah, C Laibe, C Li, N Le Novère
Journal of The Royal Society Interface 6 (Suppl 4), S405-S417, 2009
Multi-Omics and Genome-Scale Modeling Reveal a Metabolic Shift During C. elegans Aging
J Hastings, A Mains, B Virk, N Rodriguez, S Murdoch, J Pearce, ...
Frontiers in molecular biosciences 6, 2, 2019
JSBML 1.0: providing a smorgasbord of options to encode systems biology models
N Rodriguez, A Thomas, L Watanabe, IY Vazirabad, V Kofia, HF Gómez, ...
Bioinformatics 31 (20), 3383-3386, 2015
The systems biology simulation core algorithm
R Keller, A Dörr, A Tabira, A Funahashi, MJ Ziller, R Adams, N Rodriguez, ...
BMC systems biology 7 (1), 55, 2013
MELTING, a flexible platform to predict the melting temperatures of nucleic acids
M Dumousseau, N Rodriguez, N Juty, N Le Novere
BMC bioinformatics 13 (1), 101, 2012
SBMLeditor: effective creation of models in the Systems Biology Markup Language (SBML)
N Rodriguez, M Donizelli, N Le Novère
BMC bioinformatics 8 (1), 79, 2007
Modeling meets metabolomics–the wormjam consensus model as basis for metabolic studies in the model organism Caenorhabditis elegans
MA Witting, J Hastings, N Rodriguez, C Joshi, J Hattwell, P Ebert, ...
Frontiers in Molecular Biosciences 5, 96, 2018
The systems biology format converter
N Rodriguez, JB Pettit, P Dalle Pezze, L Li, A Henry, MP van Iersel, ...
BMC bioinformatics 17 (1), 154, 2016
Qualitative translation of relations from BioPAX to SBML qual
F Büchel, C Wrzodek, F Mittag, A Dräger, J Eichner, N Rodriguez, ...
Bioinformatics 28 (20), 2648-2653, 2012
The system can't perform the operation now. Try again later.
Articles 1–20