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Tomoyuki Numata
Tomoyuki Numata
Geverifieerd e-mailadres voor agr.kyushu-u.ac.jp
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Crystal structure of the CRISPR-Cas RNA silencing Cmr complex bound to a target analog
T Osawa, H Inanaga, C Sato, T Numata
Molecular cell 58 (3), 418-430, 2015
1582015
Snapshots of tRNA sulphuration via an adenylated intermediate
T Numata, Y Ikeuchi, S Fukai, T Suzuki, O Nureki
Nature 442 (7101), 419-424, 2006
1462006
Agmatine-conjugated cytidine in a tRNA anticodon is essential for AUA decoding in archaea
Y Ikeuchi, S Kimura, T Numata, D Nakamura, T Yokogawa, T Ogata, ...
Nature chemical biology 6 (4), 277-282, 2010
1372010
Metabolic and chemical regulation of tRNA modification associated with taurine deficiency and human disease
K Asano, T Suzuki, A Saito, FY Wei, Y Ikeuchi, T Numata, R Tanaka, ...
Nucleic acids research 46 (4), 1565-1583, 2018
1192018
Reconstitution of archaeal ribonuclease P from RNA and four protein components
Y Kouzuma, M Mizoguchi, H Takagi, H Fukuhara, M Tsukamoto, ...
Biochemical and biophysical research communications 306 (3), 666-673, 2003
1162003
Structural basis of RNA-dependent recruitment of glutamine to the genetic code
H Oshikane, K Sheppard, S Fukai, Y Nakamura, R Ishitani, T Numata, ...
Science 312 (5782), 1950-1954, 2006
1022006
A fifth protein subunit Ph1496p elevates the optimum temperature for the ribonuclease P activity from Pyrococcus horikoshii OT3
H Fukuhara, M Kifusa, M Watanabe, A Terada, T Honda, T Numata, ...
Biochemical and biophysical research communications 343 (3), 956-964, 2006
882006
A class V chitinase from Arabidopsis thaliana: gene responses, enzymatic properties, and crystallographic analysis
T Ohnuma, T Numata, T Osawa, M Mizuhara, O Lampela, AH Juffer, ...
Planta 234, 123-137, 2011
832011
Crystal structure of the ribonuclease P protein Ph1877p from hyperthermophilic archaeon Pyrococcus horikoshii OT3
H Takagi, M Watanabe, Y Kakuta, R Kamachi, T Numata, I Tanaka, ...
Biochemical and biophysical research communications 319 (3), 787-794, 2004
802004
Synthetic ligands for PreQ1 riboswitches provide structural and mechanistic insights into targeting RNA tertiary structure
CM Connelly, T Numata, RE Boer, MH Moon, RS Sinniah, JJ Barchi, ...
Nature communications 10 (1), 1501, 2019
692019
Crystal Structure of a Ribonuclease P Protein Ph1601p from Pyrococcus horikoshii OT3: An Archaeal Homologue of Human Nuclear Ribonuclease P Protein Rpp21,
Y Kakuta, I Ishimatsu, T Numata, K Kimura, M Yao, I Tanaka, M Kimura
Biochemistry 44 (36), 12086-12093, 2005
692005
Crystal structure of archaeal ribonuclease P protein Ph1771p from Pyrococcus horikoshii OT3: an archaeal homolog of eukaryotic ribonuclease P protein Rpp29
T Numata, I Ishimatsu, Y Kakuta, I Tanaka, M Kimura
Rna 10 (9), 1423-1432, 2004
672004
Crystal structure and mode of action of a class V chitinase from Nicotiana tabacum
T Ohnuma, T Numata, T Osawa, M Mizuhara, KM Vårum, T Fukamizo
Plant molecular biology 75, 291-304, 2011
592011
Mechanism for the definition of elongation and termination by the class II CCA‐adding enzyme
Y Toh, D Takeshita, T Numata, S Fukai, O Nureki, K Tomita
The EMBO journal 28 (21), 3353-3365, 2009
592009
Structural basis for sulfur relay to RNA mediated by heterohexameric TusBCD complex
T Numata, S Fukai, Y Ikeuchi, T Suzuki, O Nureki
Structure 14 (2), 357-366, 2006
582006
Conserved cysteine residues of GidA are essential for biogenesis of 5-carboxymethylaminomethyluridine at tRNA anticodon
T Osawa, K Ito, H Inanaga, O Nureki, K Tomita, T Numata
Structure 17 (5), 713-724, 2009
542009
Crystal structure and chitin oligosaccharide‐binding mode of a ‘loopful’ family GH19 chitinase from rye, Secale cereale, seeds
T Ohnuma, T Numata, T Osawa, H Inanaga, Y Okazaki, S Shinya, ...
The FEBS journal 279 (19), 3639-3651, 2012
492012
Crystal structure of a “loopless” GH19 chitinase in complex with chitin tetrasaccharide spanning the catalytic center
T Ohnuma, N Umemoto, T Nagata, S Shinya, T Numata, T Taira, ...
Biochimica et Biophysica Acta (BBA)-Proteins and Proteomics 1844 (4), 793-802, 2014
452014
Crystal structure of the Cmr2–Cmr3 subcomplex in the CRISPR–Cas RNA silencing effector complex
T Osawa, H Inanaga, T Numata
Journal of molecular biology 425 (20), 3811-3823, 2013
442013
A novel transition-state analogue for lysozyme, 4-O-β-tri-N-acetylchitotriosyl moranoline, provided evidence supporting the covalent glycosyl-enzyme intermediate
M Ogata, N Umemoto, T Ohnuma, T Numata, A Suzuki, T Usui, ...
Journal of Biological Chemistry 288 (9), 6072-6082, 2013
432013
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