| PEtab—interoperable specification of parameter estimation problems in systems biology L Schmiester, Y Schälte, FT Bergmann, T Camba, E Dudkin, J Egert, ... PLoS computational biology 17 (1), e1008646, 2021 | 65 | 2021 |
| Seroepidemiology and model-based prediction of SARS-CoV-2 in Ethiopia: longitudinal cohort study among front-line hospital workers and communities EK Gudina, S Ali, E Girma, A Gize, B Tegene, GB Hundie, WT Sime, ... The Lancet Global Health 9 (11), e1517-e1527, 2021 | 33 | 2021 |
| COVID-19 outbreak in Wuhan demonstrates the limitations of publicly available case numbers for epidemiological modeling E Raimúndez, E Dudkin, J Vanhoefer, E Alamoudi, S Merkt, L Fuhrmann, ... Epidemics 34, 100439, 2021 | 20 | 2021 |
| Mini-batch optimization enables training of ODE models on large-scale datasets P Stapor, L Schmiester, C Wierling, S Merkt, D Pathirana, BMH Lange, ... Nature Communications 13 (1), 34, 2022 | 12 | 2022 |
| pyPESTO: a modular and scalable tool for parameter estimation for dynamic models Y Schälte, F Fröhlich, PJ Jost, J Vanhoefer, D Pathirana, P Stapor, ... Bioinformatics 39 (11), btad711, 2023 | 6 | 2023 |
| Long-term monitoring of SARS-CoV-2 seroprevalence and variants in Ethiopia provides prediction for immunity and cross-immunity J Hasenauer, S Merkt, S Ali, EK Gudina, W Adissu, M Muenchhoff, A Graf, ... | | 2023 |
