| Automated subtyping of HIV-1 genetic sequences for clinical and surveillance purposes: performance evaluation of the new REGA version 3 and seven other tools AC Pineda-Peña, NR Faria, S Imbrechts, P Libin, AB Abecasis, ... Infection, Genetics and Evolution 19, 337-348, 2013 | 415 | 2013 |
| A standardized framework for accurate, high-throughput genotyping of recombinant and non-recombinant viral sequences LCJ Alcantara, S Cassol, P Libin, K Deforche, OG Pybus, M Van Ranst, ... Nucleic acids research 37 (suppl_2), W634-W642, 2009 | 182 | 2009 |
| Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research F Hufsky, K Lamkiewicz, A Almeida, A Aouacheria, C Arighi, A Bateman, ... Briefings in bioinformatics 22 (2), 642-663, 2021 | 151 | 2021 |
| Modeling the early phase of the Belgian COVID-19 epidemic using a stochastic compartmental model and studying its implied future trajectories S Abrams, J Wambua, E Santermans, L Willem, E Kuylen, P Coletti, ... Epidemics, 100449, 2021 | 94 | 2021 |
| A computational method for the identification of Dengue, Zika and Chikungunya virus species and genotypes V Fonseca, PJK Libin, K Theys, NR Faria, MRT Nunes, MI Restovic, ... PLoS neglected tropical diseases 13 (5), e0007231, 2019 | 86 | 2019 |
| Genetic diversity and selective pressure in hepatitis C virus genotypes 1–6: significance for direct-acting antiviral treatment and drug resistance L Cuypers, G Li, P Libin, S Piampongsant, AM Vandamme, K Theys Viruses 7 (9), 5018-5039, 2015 | 86 | 2015 |
| Comparison of HIV-1 genotypic resistance test interpretation systems in predicting virological outcomes over time D Frentz, CAB Boucher, M Assel, A De Luca, M Fabbiani, F Incardona, ... PloS one 5 (7), e11505, 2010 | 84 | 2010 |
| The impact of contact tracing and household bubbles on deconfinement strategies for COVID-19 L Willem, S Abrams, PJK Libin, P Coletti, E Kuylen, O Petrof, ... Nature Communications 12 (1), 1-9, 2021 | 81 | 2021 |
| Scalar reward is not enough: A response to Silver, Singh, Precup and Sutton (2021) P Vamplew, BJ Smith, J Källström, G Ramos, R Rădulescu, DM Roijers, ... Autonomous Agents and Multi-Agent Systems 36 (2), 1-19, 2022 | 78 | 2022 |
| VIRULIGN: fast codon-correct alignment and annotation of viral genomes P Libin, K Deforche, K Theys, A Abecasis Bioinformatics 35 (10), 1763–1765, 2019 | 66 | 2019 |
| A prospect on the use of antiviral drugs to control local outbreaks of COVID-19 A Torneri, P Libin, J Vanderlocht, AM Vandamme, J Neyts, N Hens BMC medicine 18 (1), 1-9, 2020 | 58 | 2020 |
| The impact of HIV-1 within-host evolution on transmission dynamics K Theys, P Libin, AC Pineda-Pena, A Nowe, AM Vandamme, AB Abecasis Current opinion in virology 28, 92-101, 2018 | 56 | 2018 |
| Deep reinforcement learning for large-scale epidemic control P Libin, A Moonens, T Verstraeten, F Perez-Sanjines, N Hens, P Lemey, ... arXiv preprint arXiv:2003.13676, 2020 | 53 | 2020 |
| A data-driven metapopulation model for the Belgian COVID-19 epidemic: assessing the impact of lockdown and exit strategies P Coletti, P Libin, O Petrof, L Willem, S Abrams, SA Herzog, C Faes, ... BMC infectious diseases 21 (1), 1-12, 2021 | 47 | 2021 |
| Assessing the feasibility and effectiveness of household-pooled universal testing to control COVID-19 epidemics PJK Libin, L Willem, T Verstraeten, A Torneri, J Vanderlocht, N Hens PLOS Computational Biology 17 (3), e1008688, 2021 | 40 | 2021 |
| Treatment-associated polymorphisms in protease are significantly associated with higher viral load and lower CD4 count in newly diagnosed drug-naive HIV-1 infected patients K Theys, K Deforche, J Vercauteren, P Libin, DAMC van de Vijver, J Albert, ... Retrovirology 9 (1), 1-13, 2012 | 33 | 2012 |
| RegaDB: community-driven data management and analysis for infectious diseases P Libin, G Beheydt, K Deforche, S Imbrechts, F Ferreira, K Van Laethem, ... Bioinformatics 29 (11), 1477-1480, 2013 | 32 | 2013 |
| Multi-Agent Thompson Sampling for Bandit Applications with Sparse Neighbourhood Structures T Verstraeten, E Bargiacchi, PJK Libin, J Helsen, DM Roijers, A Nowé Scientific Reports 10 (1), 1-13, 2020 | 31* | 2020 |
| SANTA-SIM: simulating viral sequence evolution dynamics under selection and recombination A Jariani, C Warth, K Deforche, P Libin, AJ Drummond, A Rambaut, ... Virus Evolution 5 (1), vez003, 2019 | 31 | 2019 |
| Bayesian Best-Arm Identification for Selecting Influenza Mitigation Strategies PJK Libin, T Verstraeten, DM Roijers, J Grujic, K Theys, P Lemey, A Nowé Joint European Conference on Machine Learning and Knowledge Discovery in …, 2018 | 25 | 2018 |
Kristof TheysKU LeuvenGeverifieerd e-mailadres voor kuleuven.be
