| Genome sequence of the palaeopolyploid soybean J Schmutz, SB Cannon, J Schlueter, J Ma, T Mitros, W Nelson, DL Hyten, ... nature 463 (7278), 178-183, 2010 | 3534 | 2010 |
| An integrated transcriptome atlas of the crop model Glycine max, and its use in comparative analyses in plants M Libault, A Farmer, T Joshi, K Takahashi, RJ Langley, LD Franklin, J He, ... The Plant Journal 63 (1), 86-99, 2010 | 360 | 2010 |
| Inferring gene regulatory networks from multiple microarray datasets Y Wang, T Joshi, XS Zhang, D Xu, L Chen Bioinformatics 22 (19), 2413-2420, 2006 | 337 | 2006 |
| A critical assessment of Mus musculus gene function prediction using integrated genomic evidence L Peña-Castillo, M Tasan, CL Myers, H Lee, T Joshi, C Zhang, Y Guan, ... Genome biology 9 (1), 1-19, 2008 | 277 | 2008 |
| Epigenome-wide inheritance of cytosine methylation variants in a recombinant inbred population RJ Schmitz, Y He, O Valdés-López, SM Khan, T Joshi, MA Urich, JR Nery, ... Genome research 23 (10), 1663-1674, 2013 | 215 | 2013 |
| Transcriptional and physiological responses of Bradyrhizobium japonicum to desiccation-induced stress EJ Cytryn, DP Sangurdekar, JG Streeter, WL Franck, W Chang, G Stacey, ... Journal of bacteriology 189 (19), 6751-6762, 2007 | 183 | 2007 |
| Prediction of novel miRNAs and associated target genes in Glycine max T Joshi, Z Yan, M Libault, DH Jeong, S Park, PJ Green, DJ Sherrier, ... BMC bioinformatics 11 (1), 1-9, 2010 | 120 | 2010 |
| Systems analysis of seed filling in Arabidopsis: using general linear modeling to assess concordance of transcript and protein expression M Hajduch, LB Hearne, JA Miernyk, JE Casteel, T Joshi, GK Agrawal, ... Plant physiology 152 (4), 2078-2087, 2010 | 115 | 2010 |
| SNP discovery by high-throughput sequencing in soybean X Wu, C Ren, T Joshi, T Vuong, D Xu, HT Nguyen BMC genomics 11 (1), 1-10, 2010 | 110 | 2010 |
| Soybean (Glycine max) SWEET gene family: insights through comparative genomics, transcriptome profiling and whole genome re-sequence analysis G Patil, B Valliyodan, R Deshmukh, S Prince, B Nicander, M Zhao, ... BMC genomics 16 (1), 1-16, 2015 | 105 | 2015 |
| SoyDB: a knowledge database of soybean transcription factors Z Wang, M Libault, T Joshi, B Valliyodan, HT Nguyen, D Xu, G Stacey, ... BMC Plant Biology 10 (1), 1-12, 2010 | 104 | 2010 |
| Landscape of genomic diversity and trait discovery in soybean B Valliyodan, D Qiu, G Patil, P Zeng, J Huang, L Dai, C Chen, Y Li, T Joshi, ... Scientific reports 6 (1), 1-10, 2016 | 103 | 2016 |
| Legume transcription factor genes: what makes legumes so special? M Libault, T Joshi, VA Benedito, D Xu, MK Udvardi, G Stacey Plant physiology 151 (3), 991-1001, 2009 | 101 | 2009 |
| Establishment of a protein reference map for soybean root hair cells L Brechenmacher, J Lee, S Sachdev, Z Song, THN Nguyen, T Joshi, ... Plant Physiology 149 (2), 670-682, 2009 | 100 | 2009 |
| Transcription Profiling of Soybean Nodulation by Bradyrhizobium japonicum L Brechenmacher, MY Kim, M Benitez, M Li, T Joshi, B Calla, MP Lee, ... Molecular Plant-Microbe Interactions 21 (5), 631-645, 2008 | 100 | 2008 |
| MusiteDeep: a deep-learning framework for general and kinase-specific phosphorylation site prediction D Wang, S Zeng, C Xu, W Qiu, Y Liang, T Joshi, D Xu Bioinformatics 33 (24), 3909-3916, 2017 | 99 | 2017 |
| System analysis of an Arabidopsis mutant altered in de novo fatty acid synthesis reveals diverse changes in seed composition and metabolism M Chen, BP Mooney, M Hajduch, T Joshi, M Zhou, D Xu, JJ Thelen Plant physiology 150 (1), 27-41, 2009 | 89 | 2009 |
| Genome-wide transcriptome analysis of soybean primary root under varying water-deficit conditions L Song, S Prince, B Valliyodan, T Joshi, JVM dos Santos, J Wang, L Lin, ... BMC genomics 17 (1), 1-17, 2016 | 80 | 2016 |
| An Oligonucleotide Microarray Resource for Transcriptional Profiling of Bradyrhizobium japonicum WS Chang, WL Franck, E Cytryn, S Jeong, T Joshi, DW Emerich, ... Molecular plant-microbe interactions 20 (10), 1298-1307, 2007 | 80 | 2007 |
| Soybean Knowledge Base (SoyKB): a web resource for soybean translational genomics T Joshi, K Patil, MR Fitzpatrick, LD Franklin, Q Yao, JR Cook, Z Wang, ... BMC genomics 13 (1), 1-15, 2012 | 77 | 2012 |
