Zeynep Kalender Atak
Zeynep Kalender Atak
Research Associate at CRUK Cambridge Institute, University of Cambridge
Verified email at cruk.cam.ac.uk
Title
Cited by
Cited by
Year
SCENIC: single-cell regulatory network inference and clustering
S Aibar, CB GonzŠlez-Blas, T Moerman, H Imrichova, G Hulselmans, ...
Nature methods 14 (11), 1083-1086, 2017
5022017
iRegulon: from a gene list to a gene regulatory network using large motif and track collections
A Verfaillie, H ImrichovŠ, B Van de Sande, L Standaert, V Christiaens, ...
PLoS Comput Biol 10 (7), e1003731, 2014
4192014
Exome sequencing identifies mutation in CNOT3 and ribosomal genes RPL5 and RPL10 in T-cell acute lymphoblastic leukemia
K De Keersmaecker, ZK Atak, N Li, C Vicente, S Patchett, T Girardi, ...
Nature genetics 45 (2), 186-190, 2013
3362013
Decoding the regulatory landscape of melanoma reveals TEADS as regulators of the invasive cell state
A Verfaillie, H Imrichova, ZK Atak, M Dewaele, F Rambow, G Hulselmans, ...
Nature communications 6 (1), 1-16, 2015
2122015
Comprehensive analysis of transcriptome variation uncovers known and novel driver events in T-cell acute lymphoblastic leukemia
ZK Atak, V Gianfelici, G Hulselmans, K De Keersmaecker, AG Devasia, ...
PLoS Genet 9 (12), e1003997, 2013
1272013
i-cisTarget 2015 update: generalized cis-regulatory enrichment analysis in human, mouse and fly
H ImrichovŠ, G Hulselmans, Z Kalender Atak, D Potier, S Aerts
Nucleic acids research 43 (W1), W57-W64, 2015
772015
Mutation analysis of the tyrosine phosphatase PTPN2 in Hodgkin’s lymphoma and T-cell non-Hodgkin’s lymphoma
M Kleppe, T Tousseyn, E Geissinger, ZK Atak, S Aerts, A Rosenwald, ...
Haematologica 96 (11), 1723-1727, 2011
772011
Identification of a novel, recurrent MBTD1‐CXorf67 fusion in low‐grade endometrial stromal sarcoma
B Dewaele, J Przybyl, A Quattrone, J Finalet Ferreiro, V Vanspauwen, ...
International journal of cancer 134 (5), 1112-1122, 2014
752014
Mapping gene regulatory networks from single-cell omics data
MWEJ Fiers, L Minnoye, S Aibar, C Bravo GonzŠlez-Blas, Z Kalender Atak, ...
Briefings in functional genomics 17 (4), 246-254, 2018
732018
High accuracy mutation detection in leukemia on a selected panel of cancer genes
ZK Atak, K De Keersmaecker, V Gianfelici, E Geerdens, R Vandepoel, ...
PloS one 7 (6), e38463, 2012
702012
The Drosophila homologue of the amyloid precursor protein is a conserved modulator of Wnt PCP signaling
A Soldano, Z Okray, P Janovska, K TmejovŠ, E Reynaud, A Claeys, J Yan, ...
PLoS Biol 11 (5), e1001562, 2013
522013
Multiplex enhancer-reporter assays uncover unsophisticated TP53 enhancer logic
A Verfaillie, D Svetlichnyy, H Imrichova, K Davie, M Fiers, ZK Atak, ...
Genome research 26 (7), 882-895, 2016
442016
Variations in the exome of the LNCaP prostate cancer cell line
L Spans, ZK Atak, F Van Nieuwerburgh, D Deforce, E Lerut, S Aerts, ...
The Prostate 72 (12), 1317-1327, 2012
202012
Identification of high-impact cis-regulatory mutations using transcription factor specific random forest models
D Svetlichnyy, H Imrichova, M Fiers, ZK Atak, S Aerts
PLoS Comput Biol 11 (11), e1004590, 2015
182015
Using cisTargetX to Predict Transcriptional Targets and Networks in Drosophila
D Potier, ZK Atak, MN Sanchez, C Herrmann, S Aerts
Gene Regulatory Networks, 291-314, 2012
142012
Yin Yang 1 orchestrates a metabolic program required for both neural crest development and melanoma formation
S Varum, A Baggiolini, L Zurkirchen, ZK Atak, C Cantý, E Marzorati, ...
Cell Stem Cell 24 (4), 637-653. e9, 2019
82019
Decoding transcriptional states in cancer
J Wouters, ZK Atak, S Aerts
Current Opinion in Genetics & Development 43, 82-92, 2017
82017
Identification of cis-regulatory mutations generating de novo edges in personalized cancer gene regulatory networks
ZK Atak, H Imrichova, D Svetlichnyy, G Hulselmans, V Christiaens, ...
Genome medicine 9 (1), 1-13, 2017
72017
Robust gene expression programs underlie recurrent cell states and phenotype switching in melanoma
J Wouters, Z Kalender-Atak, L Minnoye, KI Spanier, M De Waegeneer, ...
Nature Cell Biology 22 (8), 986-998, 2020
52020
Single-cell gene regulatory network analysis reveals new melanoma cell states and transition trajectories during phenotype switching
J Wouters, Z Kalender-Atak, L Minnoye, KI Spanier, M De Waegeneer, ...
bioRxiv, 715995, 2019
52019
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Articles 1–20