| SCENIC: single-cell regulatory network inference and clustering S Aibar, CB González-Blas, T Moerman, VA Huynh-Thu, H Imrichova, ... Nature methods 14 (11), 1083-1086, 2017 | 3857 | 2017 |
| iRegulon: from a gene list to a gene regulatory network using large motif and track collections R Janky, A Verfaillie, H Imrichová, B Van de Sande, L Standaert, ... PLoS computational biology 10 (7), e1003731, 2014 | 835 | 2014 |
| Exome sequencing identifies mutation in CNOT3 and ribosomal genes RPL5 and RPL10 in T-cell acute lymphoblastic leukemia K De Keersmaecker, ZK Atak, N Li, C Vicente, S Patchett, T Girardi, ... Nature genetics 45 (2), 186-190, 2013 | 453 | 2013 |
| Decoding the regulatory landscape of melanoma reveals TEADS as regulators of the invasive cell state A Verfaillie, H Imrichova, ZK Atak, M Dewaele, F Rambow, G Hulselmans, ... Nature communications 6 (1), 6683, 2015 | 433 | 2015 |
| Mapping gene regulatory networks from single-cell omics data MWEJ Fiers, L Minnoye, S Aibar, C Bravo González-Blas, Z Kalender Atak, ... Briefings in functional genomics 17 (4), 246-254, 2018 | 224 | 2018 |
| Robust gene expression programs underlie recurrent cell states and phenotype switching in melanoma J Wouters, Z Kalender-Atak, L Minnoye, KI Spanier, M De Waegeneer, ... Nature Cell Biology 22 (8), 986-998, 2020 | 186 | 2020 |
| i-cisTarget 2015 update: generalized cis-regulatory enrichment analysis in human, mouse and fly H Imrichová, G Hulselmans, Z Kalender Atak, D Potier, S Aerts Nucleic acids research 43 (W1), W57-W64, 2015 | 182 | 2015 |
| Comprehensive analysis of transcriptome variation uncovers known and novel driver events in T-cell acute lymphoblastic leukemia Z Kalender Atak, V Gianfelici, G Hulselmans, K De Keersmaecker, ... PLoS genetics 9 (12), e1003997, 2013 | 177 | 2013 |
| Identification of a novel, recurrent MBTD1‐CXorf67 fusion in low‐grade endometrial stromal sarcoma B Dewaele, J Przybyl, A Quattrone, J Finalet Ferreiro, V Vanspauwen, ... International journal of cancer 134 (5), 1112-1122, 2014 | 119 | 2014 |
| Mutation analysis of the tyrosine phosphatase PTPN2 in Hodgkin’s lymphoma and T-cell non-Hodgkin’s lymphoma M Kleppe, T Tousseyn, E Geissinger, ZK Atak, S Aerts, A Rosenwald, ... Haematologica 96 (11), 1723, 2011 | 106 | 2011 |
| High accuracy mutation detection in leukemia on a selected panel of cancer genes Z Kalender Atak, K De Keersmaecker, V Gianfelici, E Geerdens, ... PloS one 7 (6), e38463, 2012 | 87 | 2012 |
| Multiplex enhancer-reporter assays uncover unsophisticated TP53 enhancer logic A Verfaillie, D Svetlichnyy, H Imrichova, K Davie, M Fiers, ZK Atak, ... Genome research 26 (7), 882-895, 2016 | 85 | 2016 |
| The Drosophila Homologue of the Amyloid Precursor Protein Is a Conserved Modulator of Wnt PCP Signaling A Soldano, Z Okray, P Janovska, K Tmejová, E Reynaud, A Claeys, J Yan, ... PLoS biology 11 (5), e1001562, 2013 | 78 | 2013 |
| 14q32 rearrangements deregulating BCL11B mark a distinct subgroup of T-lymphoid and myeloid immature acute leukemia D Di Giacomo, R La Starza, P Gorello, F Pellanera, Z Kalender Atak, ... Blood, The Journal of the American Society of Hematology 138 (9), 773-784, 2021 | 64 | 2021 |
| Yin Yang 1 orchestrates a metabolic program required for both neural crest development and melanoma formation S Varum, A Baggiolini, L Zurkirchen, ZK Atak, C Cantù, E Marzorati, ... Cell stem cell 24 (4), 637-653. e9, 2019 | 55 | 2019 |
| Interpretation of allele-specific chromatin accessibility using cell state–aware deep learning ZK Atak, II Taskiran, J Demeulemeester, C Flerin, D Mauduit, L Minnoye, ... Genome research 31 (6), 1082-1096, 2021 | 47 | 2021 |
| Yin Yang 1 sustains biosynthetic demands during brain development in a stage-specific manner L Zurkirchen, S Varum, S Giger, A Klug, J Häusel, R Bossart, M Zemke, ... Nature communications 10 (1), 2192, 2019 | 36 | 2019 |
| Identification of High-Impact cis-Regulatory Mutations Using Transcription Factor Specific Random Forest Models D Svetlichnyy, H Imrichova, M Fiers, Z Kalender Atak, S Aerts PLoS computational biology 11 (11), e1004590, 2015 | 28 | 2015 |
| A comprehensive inventory of TLX1 controlled long non-coding RNAs in T-cell acute lymphoblastic leukemia through polyA+ and total RNA sequencing K Verboom, W Van Loocke, PJ Volders, B Decaesteker, FA Cobos, ... Haematologica 103 (12), e585, 2018 | 25 | 2018 |
| Variations in the exome of the LNCaP prostate cancer cell line L Spans, ZK Atak, F Van Nieuwerburgh, D Deforce, E Lerut, S Aerts, ... The Prostate 72 (12), 1317-1327, 2012 | 22 | 2012 |
Stein AertsProfessor @ University of Leuven; VIB Scientific Director & Group LeaderVerified email at kuleuven.be
