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Ali Bashir
Ali Bashir
Rezo Therapeutics
Verified email at rezotx.com
Title
Cited by
Cited by
Year
An integrated map of structural variation in 2,504 human genomes
PH Sudmant, T Rausch, EJ Gardner, RE Handsaker, A Abyzov, ...
Nature 526 (7571), 75-81, 2015
23412015
Origins of the E. coli strain causing an outbreak of hemolytic–uremic syndrome in Germany
DA Rasko, DR Webster, JW Sahl, A Bashir, N Boisen, F Scheutz, ...
New England Journal of Medicine 365 (8), 709-717, 2011
10692011
Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encoding
KJ McKernan, HE Peckham, GL Costa, SF McLaughlin, Y Fu, EF Tsung, ...
Genome research 19 (9), 1527-1541, 2009
7982009
Multi-platform discovery of haplotype-resolved structural variation in human genomes
MJP Chaisson, AD Sanders, X Zhao, A Malhotra, D Porubsky, T Rausch, ...
Nature communications 10 (1), 1784, 2019
7492019
Extensive sequencing of seven human genomes to characterize benchmark reference materials
JM Zook, D Catoe, J McDaniel, L Vang, N Spies, A Sidow, Z Weng, Y Liu, ...
Scientific data 3 (1), 1-26, 2016
6622016
Assembly and diploid architecture of an individual human genome via single-molecule technologies
M Pendleton, R Sebra, AWC Pang, A Ummat, O Franzen, T Rausch, ...
Nature methods 12 (8), 780-786, 2015
5242015
A robust benchmark for detection of germline large deletions and insertions
JM Zook, NF Hansen, ND Olson, L Chapman, JC Mullikin, C Xiao, ...
Nature biotechnology 38 (11), 1347-1355, 2020
319*2020
Diversified microbiota of meconium is affected by maternal diabetes status
J Hu, Y Nomura, A Bashir, H Fernandez-Hernandez, S Itzkowitz, Z Pei, ...
PloS one 8 (11), e78257, 2013
2972013
A hybrid approach for the automated finishing of bacterial genomes
A Bashir, AA Klammer, WP Robins, CS Chin, D Webster, E Paxinos, ...
Nature biotechnology 30 (7), 701-707, 2012
2252012
Deep diversification of an AAV capsid protein by machine learning
DH Bryant, A Bashir, S Sinai, NK Jain, PJ Ogden, PF Riley, GM Church, ...
Nature Biotechnology 39 (6), 691-696, 2021
2112021
A geometric approach for classification and comparison of structural variants
S Sindi, E Helman, A Bashir, BJ Raphael
Bioinformatics 25 (12), i222-i230, 2009
2102009
Characterizing and overriding the structural mechanism of the quizartinib-resistant FLT3 “gatekeeper” F691L mutation with PLX3397
CC Smith, C Zhang, KC Lin, EA Lasater, Y Zhang, E Massi, LE Damon, ...
Cancer discovery 5 (6), 668-679, 2015
1702015
Evaluation of paired-end sequencing strategies for detection of genome rearrangements in cancer
A Bashir, S Volik, C Collins, V Bafna, BJ Raphael
PLoS computational biology 4 (4), e1000051, 2008
1592008
Genome sequencing of an extended series of NDM-producing Klebsiella pneumoniae isolates from neonatal infections in a Nepali hospital characterizes the extent of community …
N Stoesser, A Giess, EM Batty, AE Sheppard, AS Walker, DJ Wilson, ...
Antimicrobial agents and chemotherapy 58 (12), 7347-7357, 2014
1432014
Evolutionary dynamics of Vibrio cholerae O1 following a single-source introduction to Haiti
LS Katz, A Petkau, J Beaulaurier, S Tyler, ES Antonova, MA Turnsek, ...
MBio 4 (4), 10.1128/mbio. 00398-13, 2013
1382013
Conserved noncoding sequences in the grasses4
DC Inada, A Bashir, C Lee, BC Thomas, C Ko, SA Goff, M Freeling
Genome Research 13 (9), 2030-2041, 2003
1372003
Experimental selection of hypoxia-tolerant Drosophila melanogaster
D Zhou, N Udpa, M Gersten, DAW Visk, A Bashir, J Xue, KA Frazer, ...
Proceedings of the National Academy of Sciences 108 (6), 2349-2354, 2011
1362011
Characterization of structural variants with single molecule and hybrid sequencing approaches
A Ritz, A Bashir, S Sindi, D Hsu, I Hajirasouliha, BJ Raphael
Bioinformatics 30 (24), 3458-3466, 2014
1012014
Evidence for large inversion polymorphisms in the human genome from HapMap data
V Bansal, A Bashir, V Bafna
Genome research 17 (2), 219-230, 2007
992007
Improved OTU-picking using long-read 16S rRNA gene amplicon sequencing and generic hierarchical clustering
O Franzén, J Hu, X Bao, SH Itzkowitz, I Peter, A Bashir
Microbiome 3, 1-14, 2015
982015
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Articles 1–20