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Xiaoyu Zhuo
Xiaoyu Zhuo
washington university school of medicine
Verified email at wustl.edu
Title
Cited by
Cited by
Year
Transposable elements are major contributors to the origin, diversification, and regulation of vertebrate long noncoding RNAs
A Kapusta, Z Kronenberg, VJ Lynch, X Zhuo, LA Ramsay, G Bourque, ...
PLoS genetics 9 (4), e1003470, 2013
6942013
Co-opted transposons help perpetuate conserved higher-order chromosomal structures
MNK Choudhary, RZ Friedman, JT Wang, HS Jang, X Zhuo, T Wang
Genome biology 21, 1-14, 2020
872020
The NIEHS TaRGET II Consortium and environmental epigenomics
T Wang, EC Pehrsson, D Purushotham, D Li, X Zhuo, B Zhang, ...
Nature biotechnology 36 (3), 225-227, 2018
852018
WashU epigenome browser update 2022
D Li, D Purushotham, JK Harrison, S Hsu, X Zhuo, C Fan, S Liu, V Xu, ...
Nucleic acids research 50 (W1), W774-W781, 2022
632022
Cross-species transmission and differential fate of an endogenous retrovirus in three mammal lineages
X Zhuo, C Feschotte
PLoS pathogens 11 (11), e1005279, 2015
522015
Domestic chickens activate a piRNA defense against avian leukosis virus
YH Sun, LH Xie, X Zhuo, Q Chen, D Ghoneim, B Zhang, J Jagne, C Yang, ...
Elife 6, e24695, 2017
502017
Genome-wide characterization of endogenous retroviruses in the bat Myotis lucifugus reveals recent and diverse infections
X Zhuo, M Rho, C Feschotte
Journal of virology 87 (15), 8493-8501, 2013
442013
Exploring the coronavirus pandemic with the WashU Virus Genome Browser
JA Flynn, D Purushotham, MNK Choudhary, X Zhuo, C Fan, G Matt, D Li, ...
Nature genetics, 1-6, 2020
14*2020
Functional characterization of enhancer activity during a long terminal repeat's evolution
AY Du, X Zhuo, V Sundaram, NO Jensen, HG Chaudhari, NL Saccone, ...
Genome research 32 (10), 1840-1851, 2022
52022
Epigenomic differences in the human and chimpanzee genomes are associated with structural variation
X Zhuo, AY Du, EC Pehrsson, D Li, T Wang
Genome research 31 (2), 279-290, 2021
52021
Conserved and divergent gene regulatory programs of the mammalian neocortex
NR Zemke, EJ Armand, W Wang, S Lee, J Zhou, YE Li, H Liu, W Tian, ...
Nature 624 (7991), 390-402, 2023
42023
Amniotes co-opt intrinsic genetic instability to protect germ-line genome integrity
YH Sun, H Cui, C Song, JT Shen, X Zhuo, RH Wang, X Yu, R Ndamba, ...
Nature communications 14 (1), 812, 2023
32023
Comparing genomic and epigenomic features across species using the WashU Comparative Epigenome Browser
X Zhuo, S Hsu, D Purushotham, PK Kuntala, JK Harrison, AY Du, S Chen, ...
Genome research 33 (5), 824-835, 2023
12023
Regulatory Transposable Elements in the Encyclopedia of DNA Elements
AY Du, JD Chobirko, X Zhuo, C Feschotte, T Wang
bioRxiv, 2023.09. 05.556380, 2023
12023
Comparative single cell epigenomic analysis of gene regulatory programs in the rodent and primate neocortex
NR Zemke, EJ Armand, W Wang, S Lee, J Zhou, YE Li, H Liu, W Tian, ...
bioRxiv, 2023.04. 08.536119, 2023
12023
Evolution of transposable element-derived enhancer activity
AY Du, X Zhuo, V Sundaram, NO Jensen, HG Chaudhari, NL Saccone, ...
bioRxiv, 2022.03. 16.483999, 2022
12022
Author Correction: Conserved and divergent gene regulatory programs of the mammalian neocortex
NR Zemke, EJ Armand, W Wang, S Lee, J Zhou, YE Li, H Liu, W Tian, ...
Nature, 1-1, 2024
2024
Modbed track: Visualization of modified bases in single-molecule sequencing
D Li, X Zhuo, JK Harrison, S Liu, T Wang
Cell Genomics 3 (12), 2023
2023
Exploring the coronavirus epidemic using the new WashU Virus Genome Browser (preprint)
J Flynn, D Purushotham, MNK Choudhary, X Zhuo, C Fan, G Matt, D Li, ...
2020
Endogenous retrovirus evolution in mammalian genomes
X Zhuo
The University of Utah, 2017
2017
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Articles 1–20