Nadia Pisanti

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Roberto GrossiProfessor of Computer Science, University of Pisa, ItalyVerified email at unipi.it
Marie-France SagotDirector of Research, InriaVerified email at inria.fr
Gunnar W. KlauHeinrich Heine University DüsseldorfVerified email at hhu.de
Pierre PeterlongoInriaVerified email at inria.fr
Giulia BernardiniAssistant Professor at the University of TriesteVerified email at unimib.it
Leen StougieSenior Researcher CWI, Prof. of Operations Research Vrije Universiteit, AmsterdamVerified email at cwi.nl
Murray PattersonAssistant Professor, Georgia State UniversityVerified email at cs.gsu.edu
Tobias MarschallHeinrich Heine University DüsseldorfVerified email at hhu.de
Alexander SchönhuthFull Professor, Faculty for Technology, Bielefeld UniversityVerified email at cebitec.uni-bielefeld.de
Maxime CrochemoreKCLVerified email at kcl.ac.uk
Leo van IerselAssociate professor, TU DelftVerified email at tudelft.nl
Simone ZaccariaGroup Leader, University College London, Cancer InstituteVerified email at ucl.ac.uk
Riccardo DondiUniversità degli studi di BergamoVerified email at unibg.it
Yuri PirolaAssociate professor at DISCo, Univ. of Milano-BicoccaVerified email at unimib.it
Gustavo SacomotoPost-Doc Researcher INRIA (Lyon, France)Verified email at inria.fr
Giulia MenconiVisiting scholar, Computer Science Department, Pisa University (Italy)Verified email at mail.dm.unipi.it
Nicola PrezzaCa' Foscari University of VeniceVerified email at unive.it
Roberto MarangoniDepartment of Biology, University of Pisa, Italy and Institute of Biophysics of the CNR, ItalyVerified email at unipi.it
Andrea MarinoUniversity of FlorenceVerified email at unifi.it
Rui FerreiraStaff Machine Learning Engineer, SpotifyVerified email at spotify.com

Nadia Pisanti

University of Pisa & Erable Team INRIA

Verified email at di.unipi.it - Homepage

Computational Biology Bioinformatics Algorithms


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Applied combinatorics on words M Lothaire Cambridge Univ Pr, 2005	603	2005
Computational pan-genomics: status, promises and challenges Briefings in Bioinformatics, 2016	278*	2016
WhatsHap: Weighted Haplotype Assembly for Future-Generation Sequencing Reads M Patterson, T Marschall, N Pisanti, L Van Iersel, L Stougie, GW Klau, ... Journal of Computational Biology 22 (6), 498-509, 2015	277	2015
WhatsHap: fast and accurate read-based phasing M Martin, M Patterson, S Garg, S O Fischer, N Pisanti, GW Klau, ... BioRxiv, 085050, 2016	193	2016
RISOTTO: Fast Extraction of Motifs with Mismatches N Pisanti, AM Carvalho, L Marsan, MF Sagot LATIN 2006: Theoretical Informatics: 7th Latin American Symposium, Valdivia …, 2006	127	2006
Optimal listing of cycles and st-paths in undirected graphs E Birmelé, R Ferreira, R Grossi, A Marino, N Pisanti, R Rizzi, G Sacomoto Proceedings of the twenty-fourth annual ACM-SIAM symposium on Discrete …, 2013	97	2013
Bases of motifs for generating repeated patterns with wild cards N Pisanti, M Crochemore, R Grossi, MF Sagot IEEE/ACM Transactions on Computational Biology and Bioinformatics 2 (1), 40-50, 2005	81	2005
Identifying SNPs without a reference genome by comparing raw reads P Peterlongo, N Schnel, N Pisanti, MF Sagot, V Lacroix String Processing and Information Retrieval: 17th International Symposium …, 2010	54	2010
HapCol: accurate and memory-efficient haplotype assembly from long reads Y Pirola, S Zaccaria, R Dondi, GW Klau, N Pisanti, P Bonizzoni Bioinformatics 32 (11), 1610-1617, 2016	50	2016
WhatsHap: Haplotype Assembly for Future-Generation Sequencing Reads. M Patterson, T Marschall, N Pisanti, L van Iersel, L Stougie, GW Klau, ... RECOMB 8394, 237-249, 2014	43	2014
A basis of tiling motifs for generating repeated patterns and its complexity for higher quorum N Pisanti, M Crochemore, R Grossi, MF Sagot Mathematical Foundations of Computer Science 2003: 28th International …, 2003	43	2003
A first approach to finding common motifs with gaps CS Iliopoulos, J McHugh, P Peterlongo, N Pisanti, W Rytter, MF Sagot International Journal of Foundations of Computer Science 16 (06), 1145-1154, 2005	37	2005
On the minimum error correction problem for haplotype assembly in diploid and polyploid genomes P Bonizzoni, R Dondi, GW Klau, Y Pirola, N Pisanti, S Zaccaria Journal of Computational Biology 23 (9), 718-736, 2016	31	2016
On-line pattern matching on similar texts R Grossi, CS Iliopoulos, C Liu, N Pisanti, SP Pissis, A Retha, G Rosone, ... 28th Annual Symposium on Combinatorial Pattern Matching (CPM 2017), 9: 1-9: 14, 2017	30	2017
Lossless filter for multiple repeats with bounded edit distance P Peterlongo, GAT Sacomoto, AP Do Lago, N Pisanti, MF Sagot Algorithms for Molecular Biology 4 (1), 1-20, 2009	28	2009
Lossless filter for multiple repetitions with Hamming distance P Peterlongo, N Pisanti, F Boyer, AP Do Lago, MF Sagot Journal of Discrete Algorithms 6 (3), 497-509, 2008	28	2008
Circular sequence comparison: algorithms and applications R Grossi, CS Iliopoulos, R Mercas, N Pisanti, SP Pissis, A Retha, F Vayani Algorithms for Molecular Biology 11 (1), 1-14, 2016	25	2016
Suffix tree characterization of maximal motifs in biological sequences M Federico, N Pisanti Theoretical Computer Science 410 (43), 4391-4401, 2009	25	2009
DNA computing: a survey N Pisanti Bull. EATCS 64, 188-216, 1998	25	1998
SNPs detection by eBWT positional clustering N Prezza, N Pisanti, M Sciortino, G Rosone Algorithms for Molecular Biology 14, 1-13, 2019	24	2019

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