| Automated topology builder version 3.0: Prediction of solvation free enthalpies in water and hexane M Stroet, B Caron, KM Visscher, DP Geerke, AK Malde, AE Mark Journal of chemical theory and computation 14 (11), 5834-5845, 2018 | 369 | 2018 |
| Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: a CASP‐CAPRI experiment MF Lensink, S Velankar, A Kryshtafovych, SY Huang, ... Proteins: Structure, Function, and Bioinformatics 84, 323-348, 2016 | 164 | 2016 |
| The supramolecular organization of a peptide-based nanocarrier at high molecular detail M Rad-Malekshahi, KM Visscher, JP Rodrigues, R De Vries, WE Hennink, ... Journal of the American Chemical Society 137 (24), 7775-7784, 2015 | 74 | 2015 |
| Sense and simplicity in HADDOCK scoring: Lessons from CASP‐CAPRI round 1 A Vangone, J Rodrigues, LC Xue, GCP van Zundert, C Geng, ... Proteins: Structure, Function, and Bioinformatics 85 (3), 417-423, 2017 | 54 | 2017 |
| Engineered factor Xa variants retain procoagulant activity independent of direct factor Xa inhibitors D Verhoef, KM Visscher, CR Vosmeer, KL Cheung, PH Reitsma, ... Nature communications 8 (1), 528, 2017 | 43 | 2017 |
| Deriving Force-Field Parameters from First Principles Using a Polarizable and Higher Order Dispersion Model KM Visscher, DP Geerke J. Chem. Theory Comput. 15 (3), 1875–1883, 2019 | 40 | 2019 |
| Supramolecular Organization and Functional Implications of K+ Channel Clusters in Membranes KM Visscher, J Medeiros‐Silva, D Mance, JP Rodrigues, M Daniëls, ... Angewandte Chemie International Edition 56 (43), 13222-13227, 2017 | 37 | 2017 |
| Solvated protein–protein docking using Kyte‐Doolittle‐based water preferences PL Kastritis, KM Visscher, ADJ van Dijk, AMJJ Bonvin Proteins: Structure, Function, and Bioinformatics 81 (3), 510-518, 2013 | 34 | 2013 |
| Non‐interacting surface solvation and dynamics in protein–protein interactions KM Visscher, PL Kastritis, AMJJ Bonvin Proteins: Structure, Function, and Bioinformatics 83 (3), 445-458, 2015 | 25 | 2015 |
| Solvated protein–DNA docking using HADDOCK M van Dijk, KM Visscher, PL Kastritis, AMJJ Bonvin Journal of biomolecular NMR 56, 51-63, 2013 | 24 | 2013 |
| 2.7 Ĺ cryo-EM structure of vitrified M. musculus H-chain apoferritin from a compact 200 keV cryo-microscope F Hamdi, C Tüting, DA Semchonok, KM Visscher, FL Kyrilis, A Meister, ... PloS one 15 (5), e0232540, 2020 | 18* | 2020 |
| Deriving a polarizable force field for biomolecular building blocks with minimal empirical calibration KM Visscher, DP Geerke The Journal of Physical Chemistry B 124 (9), 1628-1636, 2020 | 14 | 2020 |
| Predicting the prevalence of alternative warfarin tautomers in solution AK Malde, M Stroet, B Caron, KM Visscher, AE Mark Journal of chemical theory and computation 14 (8), 4405-4415, 2018 | 11 | 2018 |
| A QM/MM Derived Polarizable Water Model for Molecular Simulation KM Visscher, WC Swope, DP Geerke Molecules 23 (12), 3131, 2018 | 10 | 2018 |
| A systematic approach to calibrate a transferable polarizable force field parameter set for primary alcohols KM Visscher, CR Vosmeer, RA Luirink, DP Geerke Journal of Computational Chemistry 38 (8), 508-517, 2017 | 6 | 2017 |
| OFraMP: a fragment-based tool to facilitate the parametrization of large molecules M Stroet, B Caron, MS Engler, J van der Woning, A Kauffmann, M van Dijk, ... Journal of Computer-Aided Molecular Design 37 (8), 357-371, 2023 | | 2023 |
| Calibration of next generation first-principle derived polarizable force fields KM Visscher | | 2021 |
| The Automated Topology Builder Version 3.0 (ATB3. 0): Prediction of Solvation Free Enthalpies in Water and Hexane. M Stroet, B Caron, KM Visscher, DP Geerke, AK Malde, AE Mark | | |
Alexandre M.J.J. BonvinUtrecht universityGeverifieerd e-mailadres voor uu.nl
