Faraz Hach

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Citaties	2464	1717
h-index	22	19
i10-index	28	26

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Medeauteurs

Cenk SahinalpSenior Investigator, Cancer Data Science Lab, National Cancer Institute, NIHGeverifieerd e-mailadres voor nih.gov
Can AlkanBilkent University, Ankara, TurkeyGeverifieerd e-mailadres voor cs.bilkent.edu.tr
Evan EichlerProfessor of Genome Sciences, University of WashingtonGeverifieerd e-mailadres voor gs.washington.edu
Fereydoun HormozdiariAssistant Professor at University of California - DavisGeverifieerd e-mailadres voor ucdavis.edu
Iman HajirasoulihaAssistant Professor, Weill Cornell Medicine of Cornell University, New York CityGeverifieerd e-mailadres voor med.cornell.edu
Ibrahim NumanagićUniversity of VictoriaGeverifieerd e-mailadres voor uvic.ca
The Phuong DaoMemorial Sloan Kettering Cancer CenterGeverifieerd e-mailadres voor mskcc.org
Farhad HormozdiariResearch Scientist at Google HealthGeverifieerd e-mailadres voor google.com
Deniz YorukogluMassachusetts Institute of TechnologyGeverifieerd e-mailadres voor mit.edu
Ehsan HaghshenasSimon Fraser UniversityGeverifieerd e-mailadres voor sfu.ca
Inanc BirolGenome Sciences Centre, BC Cancer AgencyGeverifieerd e-mailadres voor bcgsc.ca
Cedric ChauveProfessor of Mathematics, Simon Fraser UniversityGeverifieerd e-mailadres voor sfu.ca
James BonfieldWellcome Trust Sanger InstituteGeverifieerd e-mailadres voor sanger.ac.uk
Sohrab ShahMemorial Sloan Kettering Cancer CenterGeverifieerd e-mailadres voor mskcc.org
Jens StoyeBielefeld University, Faculty of Technology and Center for Biotechnology (CeBiTec)Geverifieerd e-mailadres voor uni-bielefeld.de
Alexander WyattAssistant Professor, University of British ColumbiaGeverifieerd e-mailadres voor prostatecentre.com
Kim N. ChiProfessor of Medicine, University of British ColumbiaGeverifieerd e-mailadres voor bccancer.bc.ca
Donghyuk LeeNVIDIAGeverifieerd e-mailadres voor nvidia.com
Hongyi XinShanghai Jiao Tong UniversityGeverifieerd e-mailadres voor sjtu.edu.cn

Faraz Hach

Assistant Professor at University of British Columbia

Geverifieerd e-mailadres voor ubc.ca - Homepage

Bioinformatics Algorithms Computational Biology Single Molecule Sequencing Technologies Structural Variation Discovery


Titel Sorteren op citaties Sorteren op jaar Sorteren op titel	Geciteerd door Geciteerd door	Jaar
Pan-cancer analysis of whole genomes I The, TPCA of Whole, Genomes Consortium Nature 578 (7793), 82, 2020	367	2020
Spatial genomic heterogeneity within localized, multifocal prostate cancer PC Boutros, M Fraser, NJ Harding, R De Borja, D Trudel, E Lalonde, ... Nature genetics 47 (7), 736-745, 2015	347	2015
mrsFAST: a cache-oblivious algorithm for short-read mapping F Hach, F Hormozdiari, C Alkan, F Hormozdiari, I Birol, EE Eichler, ... Nature methods 7 (8), 576-577, 2010	300	2010
Next-generation VariationHunter: combinatorial algorithms for transposon insertion discovery F Hormozdiari, I Hajirasouliha, P Dao, F Hach, D Yorukoglu, C Alkan, ... Bioinformatics 26 (12), i350-i357, 2010	251	2010
From sequence to molecular pathology, and a mechanism driving the neuroendocrine phenotype in prostate cancer AV Lapuk, C Wu, AW Wyatt, A McPherson, BJ McConeghy, S Brahmbhatt, ... The Journal of Pathology 227 (3), 286-297, 2012	164	2012
SCALCE: boosting Sequence Compression Algorithms using Locally Consistent Encoding F Hach, I Numanagić, C Alkan, SC Sahinalp Bioinformatics 28 (23), 3051-3057., 2012	148	2012
Alu repeat discovery and characterization within human genomes F Hormozdiari, C Alkan, M Ventura, I Hajirasouliha, M Malig, F Hach, ... Genome Research 21 (6), 840-849, 2011	111	2011
Comparison of high-throughput sequencing data compression tools I Numanagić, JK Bonfield, F Hach, J Voges, J Ostermann, C Alberti, ... nature methods 13 (12), 1005-1008, 2016	84	2016
Integrated genome and transcriptome sequencing identifies a novel form of hybrid and aggressive prostate cancer C Wu, AW Wyatt, AV Lapuk, A McPherson, BJ McConeghy, RH Bell, ... The Journal of pathology 227 (1), 53-61, 2012	69	2012
Comrad: detection of expressed rearrangements by integrated analysis of RNA-Seq and low coverage genome sequence data A McPherson, C Wu, I Hajirasouliha, F Hormozdiari, F Hach, A Lapuk, ... Bioinformatics 27 (11), 1481-1488, 2011	54	2011
mrsFAST-Ultra: a compact, SNP-aware mapper for high performance sequencing applications F Hach, I Sarrafi, F Hormozdiari, C Alkan, EE Eichler, SC Sahinalp Nucleic acids research 42 (W1), W494-W500, 2014	53	2014
Cliiq: Accurate comparative detection and quantification of expressed isoforms in a population YY Lin, P Dao, F Hach, M Bakhshi, F Mo, A Lapuk, C Collins, SC Sahinalp International Workshop on Algorithms in Bioinformatics, 178-189, 2012	46	2012
Colormap: Correcting long reads by mapping short reads E Haghshenas, F Hach, SC Sahinalp, C Chauve Bioinformatics 32 (17), i545-i551, 2016	45	2016
PhISCS: a combinatorial approach for subperfect tumor phylogeny reconstruction via integrative use of single-cell and bulk sequencing data S Malikic, FR Mehrabadi, S Ciccolella, MK Rahman, C Ricketts, ... Genome research 29 (11), 1860-1877, 2019	42	2019
DeeZ: reference-based compression by local assembly F Hach, I Numanagic, SC Sahinalp Nature methods 11 (11), 1082-1084, 2014	42	2014
BAP1 haploinsufficiency predicts a distinct immunogenic class of malignant peritoneal mesothelioma R Shrestha, N Nabavi, YY Lin, F Mo, S Anderson, S Volik, HH Adomat, ... Genome medicine 11 (1), 1-12, 2019	41	2019
Model expansion as a framework for modelling and solving search problems D Mitchell, E Ternovska, F Hach, R Mohebali Technical Report TR 2006-24, School of Computing Science, Simon Fraser …, 2006	40	2006
SiNVICT: ultra-sensitive detection of single nucleotide variants and indels in circulating tumour DNA C Kockan, F Hach, I Sarrafi, RH Bell, B McConeghy, K Beja, A Haegert, ... Bioinformatics 33 (1), 26-34, 2017	36	2017
Sensitive and fast mapping of di-base encoded reads F Hormozdiari, F Hach, SC Sahinalp, EE Eichler, C Alkan Bioinformatics 27 (14), 1915-1921, 2011	28	2011
Combining accurate tumor genome simulation with crowdsourcing to benchmark somatic structural variant detection AY Lee, AD Ewing, K Ellrott, Y Hu, KE Houlahan, JC Bare, SMG Espiritu, ... Genome biology 19 (1), 1-15, 2018	26	2018

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