| Strelka: accurate somatic small-variant calling from sequenced tumor–normal sample pairs CT Saunders, WSW Wong, S Swamy, J Becq, LJ Murray, RK Cheetham Bioinformatics 28 (14), 1811-1817, 2012 | 1690 | 2012 |
| Manta: rapid detection of structural variants and indels for germline and cancer sequencing applications X Chen, O Schulz-Trieglaff, R Shaw, B Barnes, F Schlesinger, M Källberg, ... Bioinformatics 32 (8), 1220-1222, 2015 | 1545 | 2015 |
| Strelka2: fast and accurate calling of germline and somatic variants S Kim, K Scheffler, AL Halpern, MA Bekritsky, E Noh, M Källberg, X Chen, ... Nature methods 15 (8), 591-594, 2018 | 1041 | 2018 |
| Isaac: ultra-fast whole-genome secondary analysis on Illumina sequencing platforms C Raczy, R Petrovski, CT Saunders, I Chorny, S Kruglyak, EH Margulies, ... Bioinformatics 29 (16), 2041-2043, 2013 | 353 | 2013 |
| Evaluation of structural and evolutionary contributions to deleterious mutation prediction CT Saunders, D Baker Journal of molecular biology 322 (4), 891-901, 2002 | 268 | 2002 |
| Compressing Genomic Sequence Fragments Using SlimGene C Kozanitis, C Saunders, S Kruglyak, V Bafna, G Varghese Journal of Computational Biology 18 (3), 401-413, 2011 | 115 | 2011 |
| Recapitulation of protein family divergence using flexible backbone protein design CT Saunders, D Baker Journal of molecular biology 346 (2), 631-644, 2005 | 78 | 2005 |
| Compressing Genomic Sequence Fragments Using SlimGene C Kozanitis, C Saunders, S Kruglyak, V Bafna, G Varghese Annual International Conference on Research in Computational Molecular …, 2010 | 32 | 2010 |
| REViewer: haplotype-resolved visualization of read alignments in and around tandem repeats E Dolzhenko, B Weisburd, K Ibañez, IS Rajan-Babu, C Anyansi, ... Genome medicine 14 (1), 1-10, 2022 | 19 | 2022 |
| Direct haplotype-resolved 5-base HiFi sequencing for genome-wide profiling of hypermethylation outliers in a rare disease cohort WA Cheung, WJ Rowell, EG Farrow, AF Johnson, R Hall, ASA Cohen, ... medRxiv, 2022 | 10 | 2022 |
| Insights from modeling protein evolution with context-dependent mutation and asymmetric amino acid selection CT Saunders, P Green Molecular biology and evolution 24 (12), 2632-2647, 2007 | 6 | 2007 |
| Modeling Protein Evolution: Phylogenetic Analysis with Context-dependent Mutation and Recapitulation of Family Divergence Via Flexible Backbone Design CT Saunders University of Washington, 2007 | | 2007 |
| Indel detection using guided reassembly of unaligned paired-end reads O Schulz-Trieglaff, BDBAJ Cox, RK Cheetham, RJ Grocock, LJ Murray, ... | | |
