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David Páez-Espino
David Páez-Espino
Mammoth BioSciences // DOE-JGI
Geverifieerd e-mailadres voor mammothbiosci.com
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Uncovering Earth’s virome
D Paez-Espino, EA Eloe-Fadrosh, GA Pavlopoulos, AD Thomas, ...
Nature 536 (7617), 425-430, 2016
6982016
The Standard European Vector Architecture (SEVA): a coherent platform for the analysis and deployment of complex prokaryotic phenotypes
R Silva-Rocha, E Martínez-García, B Calles, M Chavarría, ...
Nucleic acids research 41 (D1), D666-D675, 2013
5182013
Programmed DNA destruction by miniature CRISPR-Cas14 enzymes
LB Harrington, D Burstein, JS Chen, D Paez-Espino, E Ma, IP Witte, ...
Science 362 (6416), 839-842, 2018
4972018
Microbial responses to environmental arsenic
D Páez-Espino, J Tamames, V de Lorenzo, D Cánovas
Biometals 22 (1), 117-130, 2009
3602009
The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v. 4)
M Huntemann, NN Ivanova, K Mavromatis, HJ Tripp, D Paez-Espino, ...
Standards in genomic sciences 10 (1), 1-6, 2015
3282015
Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection
R Seshadri, SC Leahy, GT Attwood, KH Teh, SC Lambie, AL Cookson, ...
Nature biotechnology 36 (4), 359-367, 2018
2962018
Minimum information about an uncultivated virus genome (MIUViG)
S Roux, EM Adriaenssens, BE Dutilh, EV Koonin, AM Kropinski, ...
Nature biotechnology 37 (1), 29-37, 2019
2202019
A genomic catalog of Earth’s microbiomes
S Nayfach, S Roux, R Seshadri, D Udwary, N Varghese, F Schulz, D Wu, ...
Nature biotechnology 39 (4), 499-509, 2021
2142021
1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life
S Mukherjee, R Seshadri, NJ Varghese, EA Eloe-Fadrosh, ...
Nature biotechnology 35 (7), 676-683, 2017
2052017
Strong bias in the bacterial CRISPR elements that confer immunity to phage
D Paez-Espino, W Morovic, CL Sun, BC Thomas, K Ueda, B Stahl, ...
Nature Communications 4, 1430, 2013
1882013
IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses
D Paez-Espino, IMA Chen, K Palaniappan, A Ratner, K Chu, E Szeto, ...
Nucleic acids research 45 (D1), gkw1030, 2016
1602016
CRISPR immunity drives rapid phage genome evolution in Streptococcus thermophilus
D Paez-Espino, I Sharon, W Morovic, B Stahl, BC Thomas, R Barrangou, ...
MBio 6 (2), e00262-15, 2015
1492015
Giant virus diversity and host interactions through global metagenomics
F Schulz, S Roux, D Paez-Espino, S Jungbluth, DA Walsh, VJ Denef, ...
Nature 578 (7795), 432-436, 2020
1302020
A thermostable Cas9 with increased lifetime in human plasma
LB Harrington, D Paez-Espino, BT Staahl, JS Chen, E Ma, NC Kyrpides, ...
Nature communications 8 (1), 1-8, 2017
1292017
IMG/VR v. 2.0: an integrated data management and analysis system for cultivated and environmental viral genomes
D Paez-Espino, S Roux, IMA Chen, K Palaniappan, A Ratner, K Chu, ...
Nucleic acids research 47 (D1), D678-D686, 2019
1252019
Global metagenomic survey reveals a new bacterial candidate phylum in geothermal springs
EA Eloe-Fadrosh, D Paez-Espino, J Jarett, PF Dunfield, BP Hedlund, ...
Nature communications 7 (1), 1-10, 2016
1212016
Murine colitis reveals a disease-associated bacteriophage community
BA Duerkop, M Kleiner, D Paez-Espino, W Zhu, B Bushnell, B Hassell, ...
Nature microbiology 3 (9), 1023-1031, 2018
992018
IMG/VR v3: an integrated ecological and evolutionary framework for interrogating genomes of uncultivated viruses
S Roux, D Páez-Espino, IMA Chen, K Palaniappan, A Ratner, K Chu, ...
Nucleic acids research 49 (D1), D764-D775, 2021
932021
Nontargeted virus sequence discovery pipeline and virus clustering for metagenomic data
D Paez-Espino, GA Pavlopoulos, NN Ivanova, NC Kyrpides
Nature protocols 12 (8), 1673-1682, 2017
892017
A guide to conquer the biological network era using graph theory
M Koutrouli, E Karatzas, D Paez-Espino, GA Pavlopoulos
Frontiers in bioengineering and biotechnology, 34, 2020
762020
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Artikelen 1–20