Jean-François Dufayard
Jean-François Dufayard
Chercheur en génomique comparative et phylogénie, CIRAD, Montpellier
Geverifieerd e-mailadres voor cirad.fr
Titel
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Jaar
New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0
S Guindon, JF Dufayard, V Lefort, M Anisimova, W Hordijk, O Gascuel
Systematic biology 59 (3), 307-321, 2010
107442010
Phylogeny. fr: robust phylogenetic analysis for the non-specialist
A Dereeper, V Guignon, G Blanc, S Audic, S Buffet, F Chevenet, ...
Nucleic acids research 36 (suppl_2), W465-W469, 2008
39442008
Estimating maximum likelihood phylogenies with PhyML
S Guindon, F Delsuc, JF Dufayard, O Gascuel
Bioinformatics for DNA sequence analysis, 113-137, 2009
6682009
Survey of branch support methods demonstrates accuracy, power, and robustness of fast likelihood-based approximation schemes
M Anisimova, M Gil, JF Dufayard, C Dessimoz, O Gascuel
Systematic biology 60 (5), 685-699, 2011
4972011
The genome sequence of the orchid Phalaenopsis equestris
J Cai, X Liu, K Vanneste, S Proost, WC Tsai, KW Liu, LJ Chen, Y He, Q Xu, ...
Nature genetics 47 (1), 65-72, 2015
2412015
Tree pattern matching in phylogenetic trees: automatic search for orthologs or paralogs in homologous gene sequence databases
JF Dufayard, L Duret, S Penel, M Gouy, F Rechenmann, G Perrière
Bioinformatics 21 (11), 2596-2603, 2005
1962005
Databases of homologous gene families for comparative genomics
S Penel, AM Arigon, JF Dufayard, AS Sertier, V Daubin, L Duret, M Gouy, ...
BMC bioinformatics 10 (S6), S3, 2009
1622009
The banana genome hub
G Droc, D Lariviere, V Guignon, N Yahiaoui, D This, O Garsmeur, ...
Database 2013, 2013
882013
Identification of the Hevea brasiliensisAP2/ERF superfamily by RNA sequencing
C Duan, X Argout, V Gébelin, M Summo, JF Dufayard, J Leclercq, ...
BMC genomics 14 (1), 30, 2013
732013
PhyML: fast and accurate phylogeny reconstruction by maximum likelihood
S Guindon, JF Dufayard, W Hordijk, V Lefort, O Gascuel
Infection Genetics and Evolution 9 (3), 384-385, 2009
592009
Some ethylene biosynthesis and AP2/ERF genes reveal a specific pattern of expression during somatic embryogenesis in Hevea brasiliensis
P Piyatrakul, RA Putranto, F Martin, M Rio, F Dessailly, J Leclercq, ...
BMC plant biology 12 (1), 244, 2012
442012
Evolutionary dynamics of the leucine-rich repeat receptor-like kinase (LRR-RLK) subfamily in angiosperms
I Fischer, A Diévart, G Droc, JF Dufayard, N Chantret
Plant physiology 170 (3), 1595-1610, 2016
392016
New insights on leucine-rich repeats receptor-like kinase orthologous relationships in angiosperms
JF Dufayard, M Bettembourg, I Fischer, G Droc, E Guiderdoni, C Périn, ...
Frontiers in Plant Science 8, 381, 2017
282017
PlasmoDraft: a database of Plasmodium falciparum gene function predictions based on postgenomic data
L Bréhélin, JF Dufayard, O Gascuel
BMC bioinformatics 9 (1), 440, 2008
282008
Impact of recurrent gene duplication on adaptation of plant genomes
I Fischer, J Dainat, V Ranwez, S Glémin, JF Dufayard, N Chantret
BMC plant biology 14 (1), 151, 2014
272014
SNiPlay3: a web-based application for exploration and large scale analyses of genomic variations
A Dereeper, F Homa, G Andres, G Sempere, G Sarah, Y Hueber, ...
Nucleic Acids Research 43 (W1), W295-W300, 2015
192015
In silico analysis of usher encoding genes in Klebsiella pneumoniae and characterization of their role in adhesion and colonization
F Khater, D Balestrino, N Charbonnel, JF Dufayard, S Brisse, C Forestier
PloS one 10 (3), e0116215, 2015
182015
The South Green portal: a comprehensive resource for tropical and Mediterranean crop genomics
V Guignon, Y Hueber, M Rouard, S Bocs, D Couvin, F De Lamotte, G Droc, ...
Current Plant Biology 7, 6-9, 2016
102016
Pedigree-based linkage map in two genetic groups of oil palm
B Cochard, C Carrasco-Lacombe, V Pomiès, JF Dufayard, E Suryana, ...
Tree Genetics & Genomes 11 (4), 68, 2015
62015
Incremental algorithms for the alignment and the phylogeny of large homologous sequence families
JF Dufayard
Ph. D. Thesis, Joseph Fourier University, Grenoble, France, 2004
32004
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Artikelen 1–20