|Next-generation characterization of the cancer cell line encyclopedia|
M Ghandi, FW Huang, J Jané-Valbuena, GV Kryukov, CC Lo, ...
Nature 569 (7757), 503-508, 2019
|Unsupervised clustering and epigenetic classification of single cells|
M Zamanighomi, Z Lin, T Daley, X Chen, Z Duren, A Schep, WJ Greenleaf, ...
Nature communications 9 (1), 1-8, 2018
|Integrative analysis of single-cell genomics data by coupled nonnegative matrix factorizations|
Z Duren, X Chen, M Zamanighomi, W Zeng, A Satpathy, H Chang, ...
Proceedings of the National Academy of Sciences 115 (30), 7723-7728, 2018
|Kinematic analysis of the gait of adult sheep during treadmill locomotion: parameter values, allowable total error, and potential for use in evaluating spinal cord injury|
S Safayi, ND Jeffery, SK Shivapour, M Zamanighomi, TJ Zylstra, ...
Journal of the neurological sciences 358 (1-2), 107-112, 2015
|Simultaneous dimension reduction and adjustment for confounding variation|
Z Lin, C Yang, Y Zhu, J Duchi, Y Fu, Y Wang, B Jiang, M Zamanighomi, ...
Proceedings of the National Academy of Sciences 113 (51), 14662-14667, 2016
|Multiple-access channel with correlated states and cooperating encoders|
MJ Emadi, M Zamanighomi, MR Aref
IET communications 6 (13), 1857-1867, 2012
|GEMINI: a variational Bayesian approach to identify genetic interactions from combinatorial CRISPR screens|
M Zamanighomi, SS Jain, T Ito, D Pal, TP Daley, WR Sellers
Genome biology 20 (1), 1-10, 2019
|Multiple-antenna interference channels with real interference alignment and receive antenna joint processing based on simultaneous Diophantine approximation|
M Zamanighomi, Z Wang
IEEE transactions on information theory 60 (8), 4757-4769, 2014
|Predicting transcription factor binding motifs from DNA-binding domains, chromatin accessibility and gene expression data|
M Zamanighomi, Z Lin, Y Wang, R Jiang, WH Wong
Nucleic acids research 45 (10), 5666-5677, 2017
|A new method for variable elimination in systems of inequations|
FS Chaharsooghi, MJ Emadi, M Zamanighomi, MR Aref
2011 IEEE International Symposium on Information Theory Proceedings, 1215-1219, 2011
|Degrees of freedom region of wireless X networks based on real interference alignment|
M Zamanighomi, Z Wang
IEEE Transactions on Information Theory 62 (4), 1931-1941, 2016
|Linear minimum mean-square error estimation based on high-dimensional data with missing values|
M Zamanighomi, Z Wang, K Slavakis, GB Giannakis
2014 48th Annual Conference on Information Sciences and Systems (CISS), 1-5, 2014
|Model-based approach to the joint analysis of single-cell data on chromatin accessibility and gene expression|
Z Lin, M Zamanighomi, T Daley, S Ma, WH Wong
Statistical Science 35 (1), 2-13, 2020
|Estimating high-dimensional covariance matrices with misses for Kronecker product expansion models|
M Zamanighomi, Z Wang, GB Giannakis
2016 IEEE International Conference on Acoustics, Speech and Signal …, 2016
|Gene regulatory network inference from perturbed time-series expression data via ordered dynamical expansion of non-steady state actors|
M Zamanighomi, M Zamanian, M Kimber, Z Wang
IEEE/ACM transactions on computational biology and bioinformatics 15 (4 …, 2015
|CLIFF, a bioinformatics software tool to explore molecular differences between two sets of cancer cell lines|
A Wernitznig, JJ Lipp¹, T Zichner¹, D Gerlach¹, MJ Bauer¹, T Voss¹, ...
Cancer Research 80 (16 Supplement), 3227-3227, 2020
|Network topology identification based on measured data|