Ben Busby
Ben Busby
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Magic-BLAST, an accurate RNA-seq aligner for long and short reads
GM Boratyn, J Thierry-Mieg, D Thierry-Mieg, B Busby, TL Madden
BMC bioinformatics 20, 1-19, 2019
A global benchmark study using affinity-based biosensors
RL Rich, GA Papalia, PJ Flynn, J Furneisen, J Quinn, JS Klein, ...
Analytical biochemistry 386 (2), 194-216, 2009
Integrated informatics analysis of cancer-related variants
KA Pagel, R Kim, K Moad, B Busby, L Zheng, C Tokheim, M Ryan, ...
JCO clinical cancer informatics 4, 310-317, 2020
Contribution of phage‐derived genomic islands to the virulence of facultative bacterial pathogens
B Busby, DM Kristensen, EV Koonin
Environmental microbiology 15 (2), 307-312, 2013
Box, stalked, and upside-down? Draft genomes from diverse jellyfish (Cnidaria, Acraspeda) lineages: Alatina alata (Cubozoa), Calvadosia cruxmelitensis (Staurozoa), and …
A Ohdera, CL Ames, RB Dikow, E Kayal, M Chiodin, B Busby, S La, ...
GigaScience 8 (7), giz069, 2019
iCn3D: from web-based 3D viewer to structural analysis tool in batch mode
J Wang, P Youkharibache, A Marchler-Bauer, C Lanczycki, D Zhang, S Lu, ...
Frontiers in molecular biosciences 9, 831740, 2022
Acute and chronic pancreatitis disease prevalence, classification, and comorbidities: a cohort study of the UK BioBank
DM Spagnolo, PJ Greer, CS Ohlsen, S Mance, M Ellison, C Breze, ...
Clinical and translational gastroenterology 13 (1), e00455, 2022
dbVar structural variant cluster set for data analysis and variant comparison
L Phan, J Hsu, M Willi, T Mansour, Y Kai, J Garner, J Lopez, B Busby
F1000Research 5, 2016
Predicting drug-metagenome interactions: Variation in the microbial β-glucuronidase level in the human gut metagenomes
MM Elmassry, S Kim, B Busby
PLoS One 16 (1), e0244876, 2021
Reply to the paper: Misunderstood parameters of NCBI BLAST impacts the correctness of bioinformatics workflows
TL Madden, B Busby, J Ye
Bioinformatics 35 (15), 2699-2700, 2019
Mitogen-activated protein kinase signaling causes malignant melanoma cells to differentially alter extracellular matrix biosynthesis to promote cell survival
A Afasizheva, A Devine, H Tillman, KL Fung, WD Vieira, BH Blehm, ...
BMC cancer 16, 1-15, 2016
Electrostatic interactions mediate binding of obscurin to small ankyrin 1: biochemical and molecular modeling studies
B Busby, T Oashi, CD Willis, MA Ackermann, ...
Journal of molecular biology 408 (2), 321-334, 2011
Characterization and comparison of two binding sites on obscurin for small ankyrin 1
B Busby, CD Willis, MA Ackermann, A Kontrogianni-Konstantopoulos, ...
Biochemistry 49 (46), 9948-9956, 2010
Closing gaps between open software and public data in a hackathon setting: user-centered software prototyping
B Busby, M Lesko, L Federer
F1000Research 5, 2016
A strategy for building and using a human reference pangenome
B Llamas, G Narzisi, V Schneider, PA Audano, E Biederstedt, L Blauvelt, ...
F1000Research 8, 2019
NovoGraph: Human genome graph construction from multiple long-read de novo assemblies
E Biederstedt, JC Oliver, NF Hansen, A Jajoo, N Dunn, A Olson, B Busby, ...
F1000Research 7, 2018
Effect of Domestication on the Spread of the [PIN+] Prion in Saccharomyces cerevisiae
AC Kelly, B Busby, RB Wickner
Genetics 197 (3), 1007-1024, 2014
Genetically defined individual reference ranges for tryptase limit unnecessary procedures and unmask myeloid neoplasms
J Chovanec, I Tunc, J Hughes, J Halstead, A Mateja, Y Liu, MP O’Connell, ...
Blood Advances 7 (9), 1796-1810, 2023
NCBI’s virus discovery Hackathon: Engaging research communities to identify cloud infrastructure requirements
R Connor, R Brister, JP Buchmann, W Deboutte, R Edwards, ...
Genes 10 (9), 714, 2019
DangerTrack: A scoring system to detect difficult-to-assess regions
I Dolgalev, F Sedlazeck, B Busby
F1000Research 6, 2017
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