Ge Tan
Ge Tan
Functional Genomics Center Zürich, ETH Zürich/University of Zürich
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JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles
A Mathelier, X Zhao, AW Zhang, F Parcy, R Worsley-Hunt, DJ Arenillas, ...
Nucleic acids research 42 (D1), D142-D147, 2014
JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles
A Mathelier, O Fornes, DJ Arenillas, C Chen, G Denay, J Lee, W Shi, ...
Nucleic acids research 44 (D1), D110-D115, 2016
JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework
A Khan, O Fornes, A Stigliani, M Gheorghe, JA Castro-Mondragon, ...
Nucleic acids research 46 (D1), D260-D266, 2018
Current methods for automated filtering of multiple sequence alignments frequently worsen single-gene phylogenetic inference
G Tan, M Muffato, C Ledergerber, J Herrero, N Goldman, M Gil, ...
Systematic biology 64 (5), 778-791, 2015
TFBSTools: an R/bioconductor package for transcription factor binding site analysis
G Tan, B Lenhard
Bioinformatics 32 (10), 1555-1556, 2016
Topologically associating domains are ancient features that coincide with Metazoan clusters of extreme noncoding conservation
N Harmston, E Ing-Simmons, G Tan, M Perry, M Merkenschlager, ...
Nature communications 8 (1), 1-13, 2017
JASPAR 2020: update of the open-access database of transcription factor binding profiles
O Fornes, JA Castro-Mondragon, A Khan, R van der Lee, X Zhang, ...
Nucleic acids research 48 (D1), D87-D92, 2020
Conserved non-coding elements: developmental gene regulation meets genome organization
D Polychronopoulos, JWD King, AJ Nash, G Tan, B Lenhard
Nucleic acids research 45 (22), 12611-12624, 2017
Structure-based prediction of the effects of a missense variant on protein stability
Y Yang, B Chen, G Tan, M Vihinen, B Shen
Amino Acids 44 (3), 847-855, 2013
Blind spots of quantitative RNA-seq: the limits for assessing abundance, differential expression, and isoform switching
H Rehrauer, L Opitz, G Tan, L Sieverling, R Schlapbach
BMC bioinformatics 14 (1), 370, 2013
Tight junction, mucin, and inflammasome‐related molecules are differentially expressed in eosinophilic, mixed, and neutrophilic experimental asthma in mice
HTT Tan, S Hagner, F Ruchti, U Radzikowska, G Tan, C Altunbulakli, ...
Allergy 74 (2), 294-307, 2019
A full-body transcriptome and proteome resource for the European common carp
I Kolder, SJ Van Der Plas-Duivesteijn, G Tan, GF Wiegertjes, M Forlenza, ...
BMC genomics 17 (1), 701, 2016
Induction of human regulatory innate lymphoid cells from group 2 innate lymphoid cells by retinoic acid
H Morita, T Kubo, B Rückert, A Ravindran, MB Soyka, AO Rinaldi, ...
Journal of Allergy and Clinical Immunology 143 (6), 2190-2201. e9, 2019
Simple chained guide trees give poorer multiple sequence alignments than inferred trees in simulation and phylogenetic benchmarks
G Tan, M Gil, AP Löytynoja, N Goldman, C Dessimoz
Proceedings of the National Academy of Sciences 112 (2), E99-E100, 2015
Laundry detergents and detergent residue after rinsing directly disrupt tight junction barrier integrity in human bronchial epithelial cells
M Wang, G Tan, A Eljaszewicz, Y Meng, P Wawrzyniak, S Acharya, ...
Journal of Allergy and Clinical Immunology 143 (5), 1892-1903, 2019
Role of Der p 1–specific B cells in immune tolerance during 2 years of house dust mite–specific immunotherapy
T Boonpiyathad, W van de Veen, O Wirz, M Sokolowska, B Rückert, G Tan, ...
Journal of Allergy and Clinical Immunology 143 (3), 1077-1086. e10, 2019
Long fragments achieve lower base quality in Illumina paired-end sequencing
G Tan, L Opitz, R Schlapbach, H Rehrauer
Scientific reports 9 (1), 1-7, 2019
Computational inference and analysis of genetic regulatory networks via a supervised combinatorial-optimization pattern
B Tang, X Wu, G Tan, SS Chen, Q Jing, B Shen
BMC systems biology 4 (2), S3, 2010
Gene expression signatures of circulating human type 1, 2, and 3 innate lymphoid cells
S Li, H Morita, M Sokolowska, G Tan, T Boonpiyathad, L Opitz, K Orimo, ...
Journal of Allergy and Clinical Immunology 143 (6), 2321-2325, 2019
Impact of high‐altitude therapy on type‐2 immune responses in asthma patients
T Boonpiyathad, G Capova, HW Duchna, AL Croxford, H Farine, A Dreher, ...
Allergy 75 (1), 84-94, 2020
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