Carl Kingsford
Carl Kingsford
Professor, Computational Biology Department, School of Computer Science, Carnegie
Geverifieerd e-mailadres voor cs.cmu.edu - Homepage
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Salmon provides fast and bias-aware quantification of transcript expression
R Patro, G Duggal, MI Love, RA Irizarry, C Kingsford
Nature methods 14 (4), 417-419, 2017
18082017
A fast, lock-free approach for efficient parallel counting of occurrences of k-mers
G Marçais, C Kingsford
Bioinformatics 27 (6), 764-770, 2011
14262011
Sailfish enables alignment-free isoform quantification from RNA-seq reads using lightweight algorithms
R Patro, SM Mount, C Kingsford
Nature biotechnology 32 (5), 462-464, 2014
5182014
Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake
CL Kingsford, K Ayanbule, SL Salzberg
Genome biology 8 (2), R22, 2007
4592007
The power of protein interaction networks for associating genes with diseases
S Navlakha, C Kingsford
Bioinformatics 26 (8), 1057-1063, 2010
3382010
What are decision trees?
C Kingsford, SL Salzberg
Nature biotechnology 26 (9), 1011-1013, 2008
2502008
Genome analysis linking recent European and African influenza (H5N1) viruses
SL Salzberg, C Kingsford, G Cattoli, DJ Spiro, DA Janies, MM Aly, ...
Emerging infectious diseases 13 (5), 713, 2007
2392007
Solving and analyzing side-chain positioning problems using linear and integer programming
CL Kingsford, B Chazelle, M Singh
Bioinformatics 21 (7), 1028-1039, 2005
2182005
Global network alignment using multiscale spectral signatures
R Patro, C Kingsford
Bioinformatics 28 (23), 3105-3114, 2012
1672012
Identification of alternative topological domains in chromatin
D Filippova, R Patro, G Duggal, C Kingsford
Algorithms for Molecular Biology 9 (1), 14, 2014
1592014
Assembly complexity of prokaryotic genomes using short reads
C Kingsford, MC Schatz, M Pop
BMC bioinformatics 11 (1), 21, 2010
1252010
A semidefinite programming approach to side chain positioning with new rounding strategies
B Chazelle, C Kingsford, M Singh
INFORMS Journal on Computing 16 (4), 380-392, 2004
1032004
Alignment and clustering of phylogenetic markers-implications for microbial diversity studies
JR White, S Navlakha, N Nagarajan, MR Ghodsi, C Kingsford, M Pop
BMC bioinformatics 11 (1), 152, 2010
942010
Revealing biological modules via graph summarization
S Navlakha, MC Schatz, C Kingsford
Journal of Computational Biology 16 (2), 253-264, 2009
872009
Fast search of thousands of short-read sequencing experiments
B Solomon, C Kingsford
Nature biotechnology 34 (3), 300-302, 2016
822016
Salmon: accurate, versatile and ultrafast quantification from RNA-seq data using lightweight-alignment
R Patro, G Duggal, C Kingsford
Biorxiv, 021592, 2015
802015
Experimental construction of very large scale DNA databases with associative search capability
JH Reif, TH LaBean, M Pirrung, VS Rana, B Guo, C Kingsford, ...
International Workshop on DNA-Based Computers, 231-247, 2001
802001
Network archaeology: uncovering ancient networks from present-day interactions
S Navlakha, C Kingsford
PLoS Comput Biol 7 (4), e1001119, 2011
762011
Assessing the benefits of using mate-pairs to resolve repeats in de novo short-read prokaryotic assemblies
J Wetzel, C Kingsford, M Pop
BMC bioinformatics 12 (1), 95, 2011
672011
2009 Swine-origin influenza A (H1N1) resembles previous influenza isolates
C Kingsford, N Nagarajan, SL Salzberg
Plos one 4 (7), e6402, 2009
652009
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Artikelen 1–20