Nima Aghaeepour
Title
Cited by
Cited by
Year
Critical assessment of automated flow cytometry data analysis techniques
N Aghaeepour, G Finak, H Hoos, TR Mosmann, R Brinkman, R Gottardo, ...
Nature methods 10 (3), 228, 2013
4462013
Guidelines for the use of flow cytometry and cell sorting in immunological studies
A Cossarizza, HD Chang, A Radbruch, M Akdis, I Andrä, F Annunziato, ...
European journal of immunology 47 (10), 1584-1797, 2017
3682017
Hematopoietic stem cell subtypes expand differentially during development and display distinct lymphopoietic programs
C Benz, MR Copley, DG Kent, S Wohrer, A Cortes, N Aghaeepour, E Ma, ...
Cell stem cell 10 (3), 273-283, 2012
2452012
Rapid cell population identification in flow cytometry data
N Aghaeepour, R Nikolic, HH Hoos, RR Brinkman
Cytometry Part A 79 (1), 6-13, 2011
1722011
Standardizing flow cytometry immunophenotyping analysis from the Human ImmunoPhenotyping Consortium
G Finak, M Langweiler, M Jaimes, M Malek, J Taghiyar, Y Korin, ...
Scientific reports 6 (1), 1-11, 2016
1372016
An immune clock of human pregnancy
N Aghaeepour, EA Ganio, D Mcilwain, AS Tsai, M Tingle, S Van Gassen, ...
Science immunology 2 (15), 2017
1022017
Early immunologic correlates of HIV protection can be identified from computational analysis of complex multivariate T-cell flow cytometry assays
N Aghaeepour, PK Chattopadhyay, A Ganesan, K O'Neill, H Zare, A Jalali, ...
Bioinformatics 28 (7), 1009-1016, 2012
822012
Flow cytometry bioinformatics
K O'Neill, N Aghaeepour, J Špidlen, R Brinkman
PLoS computational biology 9 (12), 2013
702013
Thinking outside the gate: single-cell assessments in multiple dimensions
P Kvistborg, C Gouttefangeas, N Aghaeepour, A Cazaly, ...
Immunity 42 (4), 591-592, 2015
612015
RchyOptimyx: cellular hierarchy optimization for flow cytometry
N Aghaeepour, A Jalali, K O'Neill, PK Chattopadhyay, M Roederer, ...
Cytometry Part A 81 (12), 1022-1030, 2012
602012
Patient-specific immune states before surgery are strong correlates of surgical recovery
GK Fragiadakis, B Gaudilličre, EA Ganio, N Aghaeepour, M Tingle, ...
Anesthesiology: The Journal of the American Society of Anesthesiologists 123 …, 2015
512015
A benchmark for evaluation of algorithms for identification of cellular correlates of clinical outcomes
N Aghaeepour, P Chattopadhyay, M Chikina, T Dhaene, S Van Gassen, ...
Cytometry Part A 89 (1), 16-21, 2016
462016
Deletions in the cytoplasmic domain of iRhom1 and iRhom2 promote shedding of the TNF receptor by the protease ADAM17
SK Maney, DR McIlwain, R Polz, AA Pandyra, B Sundaram, D Wolff, ...
Sci. Signal. 8 (401), ra109-ra109, 2015
412015
Automated analysis of multidimensional flow cytometry data improves diagnostic accuracy between mantle cell lymphoma and small lymphocytic lymphoma
H Zare, A Bashashati, R Kridel, N Aghaeepour, G Haffari, JM Connors, ...
American journal of clinical pathology 137 (1), 75-85, 2012
392012
Single-cell developmental classification of B cell precursor acute lymphoblastic leukemia at diagnosis reveals predictors of relapse
Z Good, J Sarno, A Jager, N Samusik, N Aghaeepour, EF Simonds, ...
Nature medicine 24 (4), 474, 2018
372018
Implementing mass cytometry at the bedside to study the immunological basis of human diseases: distinctive immune features in patients with a history of term or preterm birth
B Gaudilličre, EA Ganio, M Tingle, HL Lancero, GK Fragiadakis, QJ Baca, ...
Cytometry Part A 87 (9), 817-829, 2015
372015
Commonly occurring cell subsets in high-grade serous ovarian tumors identified by single-cell mass cytometry
VD Gonzalez, N Samusik, TJ Chen, ES Savig, N Aghaeepour, DA Quigley, ...
Cell reports 22 (7), 1875-1888, 2018
312018
Consortium D, Hoos H
N Aghaeepour, G Finak, C Flow
Mosmann TR, Brinkman R, Gottardo R, Scheuermann RH. Critical assessment of …, 2013
292013
Enhanced flowType/RchyOptimyx: a bioconductor pipeline for discovery in high-dimensional cytometry data
K O’Neill, A Jalali, N Aghaeepour, H Hoos, RR Brinkman
Bioinformatics 30 (9), 1329-1330, 2014
282014
Dynamic positioning based on voronoi cells (dpvc)
HAT Dashti, N Aghaeepour, S Asadi, M Bastani, Z Delafkar, FM Disfani, ...
Robot Soccer World Cup, 219-229, 2005
282005
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Articles 1–20