Petr Smirnov
Petr Smirnov
Graduate Student at Department of Medical Biophysics, University of Toronto
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PharmacoGx: an R package for analysis of large pharmacogenomic datasets
P Smirnov, Z Safikhani, N El-Hachem, D Wang, A She, C Olsen, ...
Bioinformatics 32 (8), 1244-1246, 2016
Revisiting inconsistency in large pharmacogenomic studies
Z Safikhani, P Smirnov, M Freeman, N El-Hachem, A She, Q Rene, ...
F1000Research 5, 2016
PharmacoDB: an integrative database for mining in vitro anticancer drug screening studies
P Smirnov, V Kofia, A Maru, M Freeman, C Ho, N El-Hachem, GA Adam, ...
Nucleic acids research 46 (D1), D994-D1002, 2018
Gene isoforms as expression-based biomarkers predictive of drug response in vitro
Z Safikhani, P Smirnov, KL Thu, J Silvester, N El-Hachem, R Quevedo, ...
Nature communications 8 (1), 1-11, 2017
Dr. VAE: improving drug response prediction via modeling of drug perturbation effects
L Rampášek, D Hidru, P Smirnov, B Haibe-Kains, A Goldenberg
Bioinformatics 35 (19), 3743-3751, 2019
Integrative cancer pharmacogenomics to infer large-scale drug taxonomy
N El-Hachem, DMA Gendoo, LS Ghoraie, Z Safikhani, P Smirnov, ...
Cancer research 77 (11), 3057-3069, 2017
Assessment of pharmacogenomic agreement
Z Safikhani, N El-Hachem, R Quevedo, P Smirnov, A Goldenberg, ...
F1000Research 5, 2016
Disruption of the anaphase-promoting complex confers resistance to TTK inhibitors in triple-negative breast cancer
KL Thu, J Silvester, MJ Elliott, W Ba-Alawi, MH Duncan, AC Elia, AS Mer, ...
Proceedings of the National Academy of Sciences 115 (7), E1570-E1577, 2018
Safikhani et al. reply
Z Safikhani, N El-Hachem, P Smirnov, M Freeman, A Goldenberg, ...
Nature 540 (7631), E2-E4, 2016
Tissue specificity of in vitro drug sensitivity
F Yao, SA Madani Tonekaboni, Z Safikhani, P Smirnov, N El-Hachem, ...
Journal of the American Medical Informatics Association 25 (2), 158-166, 2018
Personalized diagnosis of medulloblastoma subtypes across patients and model systems
DMA Gendoo, P Smirnov, M Lupien, B Haibe-Kains
Genomics 106 (2), 96-106, 2015
Design of a HIFU array for the treatment of deep venous thrombosis: a simulation study
P Smirnov, K Hynynen
Physics in Medicine & Biology 62 (15), 6108, 2017
Modeling cellular response in large-scale radiogenomic databases to advance precision radiotherapy
VSK Manem, M Lambie, I Smith, P Smirnov, V Kofia, M Freeman, ...
Cancer Research 79 (24), 6227-6237, 2019
Integrative pharmacogenomics analysis of patient-derived xenografts
AS Mer, W Ba-Alawi, P Smirnov, YX Wang, B Brew, J Ortmann, MS Tsao, ...
Cancer research 79 (17), 4539-4550, 2019
Consistency in drug response profiling Reply
Z Safikhani, N El-Hachem, P Smirnov, M Freeman, A Goldenberg, ...
Nature 540 (7631), E6-E8, 2016
Reducing Adversarial Example Transferability Using Gradient Regularization
G Adam, P Smirnov, B Haibe-Kains, A Goldenberg
arXiv preprint arXiv:1904.07980, 2019
Stochastic combinatorial ensembles for defending against adversarial examples
GA Adam, P Smirnov, D Duvenaud, B Haibe-Kains, A Goldenberg
arXiv preprint arXiv:1808.06645, 2018
Drug response consistency in CCLE and CGP Reply
Z Safikhani, N El-Hachem, P Smirnov, M Freeman, A Goldenberg, ...
Nature 540 (7631), E11-E12, 2016
ToxicoDB: an integrated database to mine and visualize large-scale toxicogenomic datasets
SK Nair, C Eeles, C Ho, G Beri, E Yoo, D Tkachuk, A Tang, P Nijrabi, ...
Nucleic Acids Research, 2020
Machine Learning for Biomarker Discovery in Cancer Pharmacogenomics Data
AS Mer, P Smirnov, B Haibe-Kains
Proceedings of the 10th ACM International Conference on Bioinformatics …, 2019
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