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Petko (Pete) Fiziev
Petko (Pete) Fiziev
Andere namenPetko Plamenov Fiziev
Illumina Artificial Intelligence Lab
Geverifieerd e-mailadres voor illumina.com - Homepage
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A combined computational-experimental approach predicts human microRNA targets
M Kiriakidou, PT Nelson, A Kouranov, P Fitziev, C Bouyioukos, ...
Genes & development 18 (10), 1165-1178, 2004
10852004
Cooperative binding of transcription factors orchestrates reprogramming
C Chronis*, P Fiziev*, B Papp, S Butz, G Bonora, S Sabri, J Ernst, K Plath
Cell 168 (3), 442-459. e20, 2017
4892017
BS-Seeker2: a versatile aligning pipeline for bisulfite sequencing data
W Guo, P Fiziev, W Yan, S Cokus, X Sun, MQ Zhang, PY Chen, ...
BMC genomics 14, 1-8, 2013
3912013
Insights into the evolution of the nucleolus by an analysis of its protein domain repertoire
E Staub, P Fiziev, A Rosenthal, B Hinzmann
Bioessays 26 (5), 567-581, 2004
1282004
Systematic epigenomic analysis reveals chromatin states associated with melanoma progression
P Fiziev*, KC Akdemir*, JP Miller, EZ Keung, NS Samant, S Sharma, ...
Cell reports 19 (4), 875-889, 2017
882017
Dual roles of RNF2 in melanoma progression
K Rai, KC Akdemir, LN Kwong, P Fiziev, CJ Wu, EZ Keung, S Sharma, ...
Cancer discovery 5 (12), 1314-1327, 2015
642015
The landscape of tolerated genetic variation in humans and primates
H Gao, T Hamp, J Ede, JG Schraiber, J McRae, M Singer-Berk, Y Yang, ...
Science 380 (6648), eabn8153, 2023
482023
Mapping molecular landmarks of human skeletal ontogeny and pluripotent stem cell-derived articular chondrocytes
GB Ferguson, B Van Handel, M Bay, P Fiziev, T Org, S Lee, R Shkhyan, ...
Nature communications 9 (1), 3634, 2018
472018
DIANA-EST: a statistical analysis
AG Hatzigeorgiou, P Fiziev, M Reczko
Bioinformatics 17 (10), 913-919, 2001
412001
Finding signal peptides in human protein sequences using recurrent neural networks
M Reczko, P Fiziev, E Staub, A Hatzigeorgiou
International Workshop on Algorithms in Bioinformatics, 60-67, 2002
272002
Rare penetrant mutations confer severe risk of common diseases
PP Fiziev*, J McRae*, JC Ulirsch, JS Dron, T Hamp, Y Yang, ...
Science 380 (6648), eabo1131, 2023
222023
Dual Roles of RNF2 in melanoma progression. Cancer Discov. 2015; 5: 1314–1327. doi: 10.1158/2159-8290
K Rai, KC Akdemir, LN Kwong, P Fiziev, CJ Wu, EZ Keung, S Sharma, ...
CD-15-0493.[Europe PMC free article][Abstract][CrossRef][Google Scholar], 0
13
ChromTime: modeling spatio-temporal dynamics of chromatin marks
P Fiziev, J Ernst
Genome biology 19, 1-18, 2018
112018
Algorithms in bioinformatics
M Reczko, E Staub, P Fiziev, A Hatzigeorgiou
Algorithms in bioinformatics, 60-67, 2002
62002
A framework for group-wise summarization and comparison of chromatin state annotations
H Vu, Z Koch, P Fiziev, J Ernst
Bioinformatics 39 (1), btac722, 2023
22023
Uniform generation of random directed graphs with prescribed degree sequence
PP Fiziev
Master’s thesis, Max Planck Institute, Germany, 2006
22006
Machine learning pipeline for genome-wide association studies
Y Field, JC Ulirsch, C Malangone, M Madrid-Mencia, G Nilsen, PT Cheng, ...
US Patent App. 18/483,313, 2024
2024
PrimateAI-3D outperforms AlphaMissense in real-world cohorts
DA Parry, T Bosc, T Hamp, P Fiziev, A Sharma, I Kassam, J McRae, ...
medRxiv, 2024.01. 12.24301193, 2024
2024
Covariate correction including drug use from temporal data
PP Fiziev, JF McRAE, F Kai-How
US Patent App. 17/968,766, 2023
2023
Optimized burden test based on nested t-tests that maximize separation between carriers and non-carriers
PP Fiziev, JF McRAE, F Kai-How
US Patent App. 17/968,285, 2023
2023
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Artikelen 1–20