Brett G. Olivier

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Frank J BruggemanProfessor, VU UniversityVerified email at vu.nl
Bas TeusinkProfessor of Systems Biology, VU University AmsterdamVerified email at vu.nl
Snoep JLStellenbosch University; Manchester University; Vrije Universiteit AmsterdamVerified email at sun.ac.za
Michael HuckaCalifornia Institute of TechnologyVerified email at caltech.edu
Dagmar WaltemathProfessor of Medical InformaticsVerified email at uni-greifswald.de
Frank T. BergmannBioQUANT/COS, Heidelberg University, Heidelberg, GermanyVerified email at caltech.edu
Johann RohwerStellenbosch UniversityVerified email at sun.ac.za
Jan-Hendrik HofmeyrStellenbosch UniversityVerified email at sun.ac.za
Sven SahleUniversität HeidelbergVerified email at bioquant.uni-heidelberg.de
David Phillip NickersonAuckland Bioengineering Institute, University of AucklandVerified email at auckland.ac.nz
Sarah KeatingUCLVerified email at ucl.ac.uk
Stefan HoopsResearch Associate Professor, Biocomplexity Institute & Initiative, University of VirginiaVerified email at virginia.edu
Darren WilkinsonProfessor of Statistics, Durham University, U.K.Verified email at durham.ac.uk
Nicolas RodriguezSenior Software Systems and Database Architect, Babraham InstituteVerified email at babraham.ac.uk
Timo MaarleveldCentrum Wiskunde InformaticaVerified email at cwi.nl
Hans WesterhoffUniversity of Amsterdam, VU University Amsterdam, University of ManchesterVerified email at manchester.ac.uk
Leen StougieSenior Researcher CWI, Prof. of Operations Research Vrije Universiteit, AmsterdamVerified email at cwi.nl
Herbert M SauroUniversity of WashingtonVerified email at u.washington.edu
Dr. Matthias KönigHumboldt-University BerlinVerified email at hu-berlin.de
Joost BoeleVU University AmsterdamVerified email at joostboele.nl

Brett G. Olivier

VU Amsterdam

Verified email at vu.nl - Homepage

Research Data Management Software Engineering Biochemistry Computational Systems Biology Standardisation


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Web-based kinetic modelling using JWS Online BG Olivier, JL Snoep Bioinformatics 20 (13), 2143-2144, 2004	399	2004
MEMOTE for standardized genome-scale metabolic model testing C Lieven, ME Beber, BG Olivier, FT Bergmann, M Ataman, P Babaei, ... Nature biotechnology 38 (3), 272-276, 2020	287	2020
Modelling cellular systems with PySCeS BG Olivier, JM Rohwer, JHS Hofmeyr Bioinformatics 21 (4), 560-561, 2005	236	2005
Community flux balance analysis for microbial consortia at balanced growth RA Khandelwal, BG Olivier, WFM Röling, B Teusink, FJ Bruggeman PloS one 8 (5), e64567, 2013	207	2013
SBML Level 3: an extensible format for the exchange and reuse of biological models SM Keating, D Waltemath, M König, F Zhang, A Dräger, C Chaouiya, ... Molecular systems biology 16 (8), e9110, 2020	174	2020
A systematic assessment of current genome-scale metabolic reconstruction tools SN Mendoza, BG Olivier, D Molenaar, B Teusink Genome biology 20 (1), 1-20, 2019	171	2019
Towards building the silicon cell: a modular approach JL Snoep, F Bruggeman, BG Olivier, HV Westerhoff Biosystems 83 (2-3), 207-216, 2006	162	2006
COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project FT Bergmann, R Adams, S Moodie, J Cooper, M Glont, M Golebiewski, ... BMC bioinformatics 15 (1), 1-9, 2014	143	2014
FAME, the flux analysis and modeling environment J Boele, BG Olivier, B Teusink BMC systems biology 6, 1-5, 2012	107	2012
Optimal flux spaces of genome-scale stoichiometric models are determined by a few subnetworks SM Kelk, BG Olivier, L Stougie, FJ Bruggeman Scientific reports 2 (1), 580, 2012	98	2012
Constraint-based stoichiometric modelling from single organisms to microbial communities W Gottstein, BG Olivier, FJ Bruggeman, B Teusink Journal of the Royal Society Interface 13 (124), 20160627, 2016	96	2016
StochPy: a comprehensive, user-friendly tool for simulating stochastic biological processes TR Maarleveld, BG Olivier, FJ Bruggeman PloS one 8 (11), e79345, 2013	95	2013
The systems biology markup language (SBML): language specification for level 3 version 2 core release 2 M Hucka, FT Bergmann, C Chaouiya, A Dräger, S Hoops, SM Keating, ... Journal of integrative bioinformatics 16 (2), 20190021, 2019	88	2019
The Systems Biology Markup Language (SBML): language specification for level 3 version 2 core M Hucka, FT Bergmann, A Dräger, S Hoops, SM Keating, N Le Novère, ... Journal of integrative bioinformatics 15 (1), 20170081, 2018	85	2018
Basic concepts and principles of stoichiometric modeling of metabolic networks TR Maarleveld, RA Khandelwal, BG Olivier, B Teusink, FJ Bruggeman Biotechnology journal 8 (9), 997-1008, 2013	83	2013
Systems modeling approaches for microbial community studies: from metagenomics to inference of the community structure M Hanemaaijer, WFM Röling, BG Olivier, RA Khandelwal, B Teusink, ... Frontiers in microbiology 6, 213, 2015	80	2015
The systems biology markup language (SBML): Language specification for level 3 version 1 core L Smith, D Wilkinson, M Hucka, F Bergmann, S Hoops, S Keating, S Sahle, ... Nature Precedings, 1-1, 2010	80	2010
Harmonizing semantic annotations for computational models in biology ML Neal, M König, D Nickerson, G Mısırlı, R Kalbasi, A Dräger, K Atalag, ... Briefings in bioinformatics 20 (2), 540-550, 2019	62	2019
Memote: A community driven effort towards a standardized genome-scale metabolic model test suite C Lieven, ME Beber, BG Olivier, FT Bergmann, M Ataman, P Babaei, ... BioRxiv, 350991, 2018	58	2018
SBML level 3 package: flux balance constraints version 2 BG Olivier, FT Bergmann Journal of integrative bioinformatics 15 (1), 20170082, 2018	58	2018

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