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Qian Liu
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Detection of DNA base modifications by deep recurrent neural network on Oxford Nanopore sequencing data
Q Liu, L Fang, G Yu, D Wang, CL Xiao, K Wang
Nature communications 10 (1), 1-11, 2019
2662019
precisionFDA Truth Challenge V2: Calling variants from short-and long-reads in difficult-to-map regions
ND Olson, J Wagner, J McDaniel, SH Stephens, ST Westreich, ...
bioRxiv, 2020
1112020
Interrogating the “unsequenceable” genomic trinucleotide repeat disorders by long-read sequencing
Q Liu, P Zhang, D Wang, W Gu, K Wang
Genome Medicine 9 (1), 65, 2017
972017
Long-read sequencing identified intronic repeat expansions in SAMD12 from Chinese pedigrees affected with familial cortical myoclonic tremor with epilepsy
S Zeng, M Zhang, X Wang, Z Hu, J Li, N Li, J Wang, F Liang, Q Yang, ...
Journal of medical genetics 56 (4), 265-270, 2019
832019
Binding Affinity Prediction for Protein–Ligand Complexes Based on β Contacts and B Factor
Q Liu, CK Kwoh, J Li
Journal of chemical information and modeling 53 (11), 3076-3085, 2013
692013
‘Double water exclusion’: a hypothesis refining the O-ring theory for the hot spots at protein interfaces
J Li, Q Liu
Bioinformatics 25 (6), 743-750, 2009
682009
NanoMod: a computational tool to detect DNA modifications using Nanopore long-read sequencing data
Q Liu, DC Georgieva, D Egli, K Wang
BMC genomics 20 (1), 31-42, 2019
662019
Use B-factor related features for accurate classification between protein binding interfaces and crystal packing contacts
Q Liu, Z Li, J Li
BMC bioinformatics 15 (16), 1-11, 2014
442014
NanoCaller for accurate detection of SNPs and indels in difficult-to-map regions from long-read sequencing by haplotype-aware deep neural networks
MU Ahsan, Q Liu, L Fang, K Wang
Genome biology 22 (1), 1-33, 2021
422021
Tertiary structure-based prediction of conformational B-cell epitopes through B factors
J Ren, Q Liu, J Ellis, J Li
Bioinformatics 30 (12), i264-i273, 2014
412014
Detection of base analogs incorporated during DNA replication by nanopore sequencing
D Georgieva, Q Liu, K Wang, D Egli
Nucleic Acids Research, gkaa517, 2020
352020
Positive-unlabeled learning for the prediction of conformational B-cell epitopes
J Ren, Q Liu, J Ellis, J Li
BMC bioinformatics 16 (S18), S12, 2015
342015
Protein binding hot spots and the residue-residue pairing preference: a water exclusion perspective
Q Liu, J Li
BMC bioinformatics 11 (1), 244, 2010
342010
Improving keyword based web image search with visual feature distribution and term expansion
Z Gong, Q Liu
Knowledge and Information Systems 21 (1), 113-132, 2009
322009
Long-read sequence assembly of the firefly Pyrocoelia pectoralis genome
X Fu, J Li, Y Tian, W Quan, S Zhang, Q Liu, F Liang, X Zhu, L Zhang, ...
GigaScience 6 (12), gix112, 2017
302017
Propensity vectors of low‐ASA residue pairs in the distinction of protein interactions
Q Liu, J Li
Proteins: Structure, Function, and Bioinformatics 78 (3), 589-602, 2010
282010
LongGF: computational algorithm and software tool for fast and accurate detection of gene fusions by long-read transcriptome sequencing
Q Liu, Y Hu, A Stucky, L Fang, JF Zhong, K Wang
BMC genomics 21 (11), 1-12, 2020
262020
Connecting rules from paired miRNA and mRNA expression data sets of HCV patients to detect both inverse and positive regulatory relationships
R Song, Q Liu, T Liu, J Li
BMC genomics 16 (S2), S11, 2015
232015
Genome-wide detection of short tandem repeat expansions by long-read sequencing
Q Liu, Y Tong, K Wang
BMC bioinformatics 21 (21), 1-15, 2020
182020
DeepRepeat: direct quantification of short tandem repeats on signal data from nanopore sequencing
L Fang, Q Liu, AM Monteys, P Gonzalez-Alegre, BL Davidson, K Wang
Genome Biology 23 (1), 1-27, 2022
172022
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Articles 1–20