| SCENIC: single-cell regulatory network inference and clustering SA Sara Aibar, Carmen Bravo González-Blas, Thomas Moerman, Vân Anh Huynh-Thu ... Nature Methods, 2017 | 4003 | 2017 |
| Phenotype molding of stromal cells in the lung tumor microenvironment D Lambrechts, E Wauters, B Boeckx, S Aibar, D Nittner, O Burton, ... Nature medicine 24 (8), 1277, 2018 | 1375 | 2018 |
| A scalable SCENIC workflow for single-cell gene regulatory network analysis B Van de Sande, C Flerin, K Davie, M De Waegeneer, G Hulselmans, ... Nature Protocols 15 (7), 2247-2276, 2020 | 835 | 2020 |
| A single-cell transcriptome atlas of the aging Drosophila brain K Davie, J Janssens, D Koldere, M De Waegeneer, U Pech, Ł Kreft, ... Cell 174 (4), 982-998. e20, 2018 | 685 | 2018 |
| Toward minimal residual disease-directed therapy in melanoma F Rambow, A Rogiers, O Marin-Bejar, S Aibar, J Femel, M Dewaele, ... Cell 174 (4), 843-855. e19, 2018 | 644 | 2018 |
| GRNBoost2 and Arboreto: efficient and scalable inference of gene regulatory networks T Moerman, S Aibar, CB González-Blas, J Simm, Y Moreau, J Aerts, ... Bioinformatics, 2018 | 437 | 2018 |
| cisTopic: cis-regulatory topic modeling on single-cell ATAC-seq data CB González-Blas, L Minnoye, D Papasokrati, S Aibar, G Hulselmans, ... Nature methods 16 (5), 397-400, 2019 | 345 | 2019 |
| Extraction and analysis of signatures from the Gene Expression Omnibus by the crowd Z Wang, CD Monteiro, KM Jagodnik, NF Fernandez, GW Gundersen, ... Nature communications 7 (1), 1-11, 2016 | 290 | 2016 |
| Mapping gene regulatory networks from single-cell omics data MWEJ Fiers, L Minnoye, S Aibar, C Bravo González-Blas, Z Kalender Atak, ... Briefings in functional genomics 17 (4), 246-254, 2018 | 230 | 2018 |
| SCENIC+: single-cell multiomic inference of enhancers and gene regulatory networks C Bravo González-Blas, S De Winter, G Hulselmans, N Hecker, ... Nature methods 20 (9), 1355-1367, 2023 | 219 | 2023 |
| The transcription factor Grainy head primes epithelial enhancers for spatiotemporal activation by displacing nucleosomes J Jacobs, M Atkins, K Davie, H Imrichova, L Romanelli, V Christiaens, ... Nature genetics 50 (7), 1011-1020, 2018 | 151 | 2018 |
| Decoding gene regulation in the fly brain J Janssens, S Aibar, II Taskiran, JN Ismail, AE Gomez, G Aughey, ... Nature, 1-7, 2022 | 135 | 2022 |
| Functional Gene Networks: R/Bioc package to generate and analyse gene networks derived from functional enrichment and clustering S Aibar, C Fontanillo, C Droste, J De Las Rivas Bioinformatics 31 (10), 1686-1688, 2015 | 71 | 2015 |
| Identification of genomic enhancers through spatial integration of single‐cell transcriptomics and epigenomics C Bravo González‐Blas, XJ Quan, R Duran‐Romaña, II Taskiran, ... Molecular systems biology 16 (5), e9438, 2020 | 67 | 2020 |
| Genome-wide profiling of methylation identifies novel targets with aberrant hypermethylation and reduced expression in low-risk myelodysplastic syndromes M del Rey, K O'Hagan, M Dellett, S Aibar, HAA Colyer, ME Alonso, ... Leukemia, 2012 | 44 | 2012 |
| Comparative oncogenomics identifies tyrosine kinase FES as a tumor suppressor in melanoma M Olvedy, JC Tisserand, F Luciani, B Boeckx, J Wouters, S Lopez, ... The Journal of Clinical Investigation 127 (6), 2310-2325, 2017 | 30 | 2017 |
| Analyse multiple disease subtypes and build associated gene networks using genome-wide expression profiles S Aibar, C Fontanillo, C Droste, B Roson-Burgo, FJ Campos-Laborie, ... BMC genomics 16 (5), 1, 2015 | 26 | 2015 |
| Identification of expression patterns in the progression of disease stages by integration of transcriptomic data S Aibar, M Abaigar, FJ Campos-Laborie, JM Sánchez-Santos, ... BMC bioinformatics 17 (15), 11-21, 2016 | 19 | 2016 |
| Identification of Novel Direct Targets of Drosophila Sine Oculis by Integration of Genome-wide Data Sets M Jin, S Aibar, Z Ge, R Chen, S Aerts, G Mardon Developmental Biology 415 (1), 157–167, 2016 | 12 | 2016 |
| Combined analysis of genome-wide expression and copy number profiles to identify key altered genomic regions in cancer C Fontanillo, S Aibar, JM Sanchez-Santos, J De Las Rivas BMC genomics 13 (5), 1, 2012 | 8 | 2012 |
Stein AertsProfessor @ University of Leuven; VIB Scientific Director & Group LeaderAdresse e-mail validée de kuleuven.be
