| Assessment of transcript reconstruction methods for RNA-seq T Steijger, JF Abril, PG Engström, F Kokocinski, TJ Hubbard, R Guigó, ... Nature methods 10 (12), 1177-1184, 2013 | 785 | 2013 |
| Multiple reference genomes and transcriptomes for Arabidopsis thaliana X Gan, O Stegle, J Behr, JG Steffen, P Drewe, KL Hildebrand, R Lyngsoe, ... Nature 477 (7365), 419-423, 2011 | 751 | 2011 |
| Systematic evaluation of spliced alignment programs for RNA-seq data PG Engström, T Steijger, B Sipos, GR Grant, A Kahles, G Rätsch, ... Nature methods 10 (12), 1185-1191, 2013 | 608 | 2013 |
| DNA methylation in Arabidopsis has a genetic basis and shows evidence of local adaptation MJ Dubin, P Zhang, D Meng, MS Remigereau, EJ Osborne, ... elife 4, e05255, 2015 | 506 | 2015 |
| Comparative genomics of protoploid Saccharomycetaceae JL Souciet, B Dujon, C Gaillardin, M Johnston, PV Baret, P Cliften, ... Genome research 19 (10), 1696-1709, 2009 | 242 | 2009 |
| Structure and co-occurrence patterns in microbial communities under acute environmental stress reveal ecological factors fostering resilience D Mandakovic, C Rojas, J Maldonado, M Latorre, D Travisany, E Delage, ... Scientific reports 8 (1), 5875, 2018 | 149 | 2018 |
| RNA‐Seq read alignments with PALMapper G Jean, A Kahles, VT Sreedharan, FD Bona, G Rätsch Current protocols in bioinformatics 32 (1), 11.6. 1-11.6. 37, 2010 | 84 | 2010 |
| Genome rearrangements: a correct algorithm for optimal capping G Jean, M Nikolski Information Processing Letters 104 (1), 14-20, 2007 | 41 | 2007 |
| Algorithms for computing the double cut and join distance on both gene order and intergenic sizes G Fertin, G Jean, E Tannier Algorithms for Molecular Biology 12, 1-11, 2017 | 30 | 2017 |
| Sorting by genome rearrangements on both gene order and intergenic sizes KL Brito, G Jean, G Fertin, AR Oliveira, U Dias, Z Dias Journal of Computational Biology 27 (2), 156-174, 2020 | 23 | 2020 |
| Sorting signed permutations by intergenic reversals AR Oliveira, G Jean, G Fertin, KL Brito, L Bulteau, U Dias, Z Dias IEEE/ACM transactions on computational biology and bioinformatics 18 (6 …, 2020 | 22 | 2020 |
| Oqtans: the RNA-seq workbench in the cloud for complete and reproducible quantitative transcriptome analysis VT Sreedharan, SJ Schultheiss, G Jean, A Kahles, R Bohnert, P Drewe, ... Bioinformatics 30 (9), 1300-1301, 2014 | 19 | 2014 |
| Sorting permutations by intergenic operations AR Oliveira, G Jean, G Fertin, KL Brito, U Dias, Z Dias IEEE/ACM transactions on computational biology and bioinformatics 18 (6 …, 2021 | 16 | 2021 |
| Hybrid de novo tandem repeat detection using short and long reads G Fertin, G Jean, A Radulescu, I Rusu BMC medical genomics 8 (Suppl 3), S5, 2015 | 13 | 2015 |
| Mining the semantics of genome super-blocks to infer ancestral architectures G Jean, DJ Sherman, M Nikolski Journal of Computational Biology 16 (9), 1267-1284, 2009 | 13 | 2009 |
| Algorithmic aspects of the maximum colorful arborescence problem G Fertin, J Fradin, G Jean International Conference on Theory and Applications of Models of Computation …, 2017 | 12 | 2017 |
| A 3.5-approximation algorithm for sorting by intergenic transpositions AR Oliveira, G Jean, G Fertin, KL Brito, U Dias, Z Dias International Conference on Algorithms for Computational Biology, 16-28, 2020 | 11 | 2020 |
| Super short operations on both gene order and intergenic sizes AR Oliveira, G Jean, G Fertin, U Dias, Z Dias Algorithms for Molecular Biology 14 (1), 21, 2019 | 9 | 2019 |
| Evaluation of open search methods based on theoretical mass spectra comparison A Lysiak, G Fertin, G Jean, D Tessier BMC bioinformatics 22, 1-17, 2021 | 8 | 2021 |
| Prefix and Suffix Reversals on Strings G Fertin, L Jankowiak, G Jean String Processing and Information Retrieval, 165-176, 2015 | 8 | 2015 |
