Song Cao
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Comprehensive characterization of cancer driver genes and mutations
MH Bailey, C Tokheim, E Porta-Pardo, S Sengupta, D Bertrand, ...
Cell 173 (2), 371-385. e18, 2018
10532018
Proteogenomics connects somatic mutations to signalling in breast cancer
P Mertins, DR Mani, KV Ruggles, MA Gillette, KR Clauser, P Wang, ...
Nature 534 (7605), 55-62, 2016
9372016
Pathogenic germline variants in 10,389 adult cancers
K Huang, RJ Mashl, Y Wu, DI Ritter, J Wang, C Oh, M Paczkowska, ...
Cell 173 (2), 355-370. e14, 2018
3212018
Driver fusions and their implications in the development and treatment of human cancers
Q Gao, WW Liang, SM Foltz, G Mutharasu, RG Jayasinghe, S Cao, ...
Cell reports 23 (1), 227-238. e3, 2018
2212018
RNA-Puzzles: A CASP-like evaluation of RNA three-dimensional structure prediction
JA Cruz, MF Blanchet, M Boniecki, JM Bujnicki, SJ Chen, S Cao, R Das, ...
RNA, 2012
2192012
Gut DNA viromes of Malawian twins discordant for severe acute malnutrition
A Reyes, LV Blanton, S Cao, G Zhao, M Manary, I Trehan, MI Smith, ...
Proceedings of the National Academy of Sciences 112 (38), 11941-11946, 2015
1872015
Predicting RNA pseudoknot folding thermodynamics
S Cao, SJ Chen
Nucleic acids research 34 (9), 2634-2652, 2006
1522006
Physics-based de novo prediction of RNA 3D structures
S Cao, SJ Chen
The journal of physical chemistry B 115 (14), 4216-4226, 2011
1212011
Predicting RNA folding thermodynamics with a reduced chain representation model
S Cao, SJ Chen
Rna 11 (12), 1884-1897, 2005
1132005
Integrated proteogenomic characterization of clear cell renal cell carcinoma
DJ Clark, SM Dhanasekaran, F Petralia, J Pan, X Song, Y Hu, ...
Cell 179 (4), 964-983. e31, 2019
1082019
Rational truncation of an RNA aptamer to prostate-specific membrane antigen using computational structural modeling
WM Rockey, FJ Hernandez, SY Huang, S Cao, CA Howell, GS Thomas, ...
Nucleic acid therapeutics 21 (5), 299-314, 2011
1072011
Systematic Analysis of Splice-Site-Creating Mutations in Cancer
RG Jayasinghe*, S Cao*, Q Gao, MC Wendl, NS Vo, SM Reynolds, ...
Cell Reports 23 (1), 270-281, 2018
1012018
Predicting structures and stabilities for H-type pseudoknots with interhelix loops
S Cao, SJ Chen
RNA 15 (4), 696-706, 2009
922009
Proteogenomic integration reveals therapeutic targets in breast cancer xenografts
K Huang, S Li, P Mertins, S Cao, HP Gunawardena, KV Ruggles, ...
Nature communications 8 (1), 1-17, 2017
912017
An analysis of the sensitivity of proteogenomic mapping of somatic mutations and novel splicing events in cancer
KV Ruggles, Z Tang, X Wang, H Grover, M Askenazi, J Teubl, S Cao, ...
Molecular & Cellular Proteomics 15 (3), 1060-1071, 2016
852016
Systematic discovery of complex insertions and deletions in human cancers
K Ye, J Wang, R Jayasinghe, EW Lameijer, JF McMichael, J Ning, ...
Nature medicine 22 (1), 97-104, 2016
842016
Identification of Novel Viruses Using VirusHunter -- an Automated Data Analysis Pipeline
G Zhao, S Krishnamurthy, Z Cai, VL Popov, AP Travassos, H Guzman, ...
PLoS one 8 (e78470), 2013
772013
Proteogenomic characterization of endometrial carcinoma
Y Dou, EA Kawaler, DC Zhou, MA Gritsenko, C Huang, L Blumenberg, ...
Cell 180 (4), 729-748. e26, 2020
712020
Proteogenomic characterization reveals therapeutic vulnerabilities in lung adenocarcinoma
MA Gillette, S Satpathy, S Cao, SM Dhanasekaran, SV Vasaikar, K Krug, ...
Cell 182 (1), 200-225. e35, 2020
582020
Geographic variation in the eukaryotic virome of human diarrhea
LR Holtz, S Cao, G Zhao, IK Bauer, DM Denno, EJ Klein, M Antonio, ...
Virology 468, 556-564, 2014
542014
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Artikelen 1–20