| RetroPath2. 0: a retrosynthesis workflow for metabolic engineers B Delépine, T Duigou, P Carbonell, JL Faulon Metabolic engineering 45, 158-170, 2018 | 218 | 2018 |
| Reinforcement learning for bioretrosynthesis M Koch, T Duigou, JL Faulon ACS synthetic biology 9 (1), 157-168, 2019 | 103 | 2019 |
| RetroRules: a database of reaction rules for engineering biology T Duigou, M Du Lac, P Carbonell, JL Faulon Nucleic acids research 47 (D1), D1229-D1235, 2019 | 101 | 2019 |
| The automated Galaxy-SynBioCAD pipeline for synthetic biology design and engineering J Hérisson, T Duigou, M Du Lac, K Bazi-Kabbaj, M Sabeti Azad, ... Nature Communications 13 (1), 5082, 2022 | 18 | 2022 |
| Molecular structures enumeration and virtual screening in the chemical space with RetroPath2. 0 M Koch, T Duigou, P Carbonell, JL Faulon Journal of cheminformatics 9, 1-17, 2017 | 18 | 2017 |
| Enzyme discovery: Enzyme selection and pathway design P Carbonell, M Koch, T Duigou, JL Faulon Methods in Enzymology 608, 3-27, 2018 | 6 | 2018 |
| PeroxiHUB: A Modular Cell-Free Biosensing Platform Using H2O2 as Signal Integrator P Soudier, A Zúñiga, T Duigou, PL Voyvodic, K Bazi-Kabbaj, M Kushwaha, ... ACS Synthetic Biology 11 (8), 2578-2588, 2022 | 4 | 2022 |
| Galaxy-SynBioCAD: Synthetic Biology Design Automation tools in Galaxy workflows M du Lac, T Duigou, J Hérisson, P Carbonell, N Swainston, V Zulkower, ... BioRxiv, 2020.06. 14.145730, 2020 | 3 | 2020 |
| Design Automation Workflows for Synthetic Biology and Metabolic Engineering: The Galaxy SynBioCAD portal M Du Lac, T Duigou, P Carbonell, JL Faulon IWBDA, 12th International Workshop on Bio-Design Automation, 2020 | 1 | 2020 |
| Similarity-guided monte carlo tree search for bio-retrosynthesis M Koch, T Duigou, JL Faulon bioRxiv, 800474, 2019 | 1 | 2019 |
| Automated Bio-Production Pipeline J Hérisson, T Duigou, G Gricourt, JL Faulon The Automated Scientist, 2024 | | 2024 |
| neo4jsbml: import systems biology markup language data into the graph database Neo4j G Gricourt, T Duigou, S Dérozier, JL Faulon PeerJ 12, e16726, 2024 | | 2024 |
| Hands-on: Hands-on: Evaluating and ranking a set of pathways based on multiple metrics K Bazi-Kabbaj, T Duigou, J Hérisson, G Gricourt, I Popescu, JL Faulon Galaxy Training Network, 2023 | | 2023 |
| Galaxy-SynBioCAD: tools and automated pipelines for Synthetic Biology Design and Metabolic Engineering J Hérisson, T Duigou, M Du Lac, KB Kabbaj, MS Azad, G Buldum, O Telle, ... Global BioFoundries Alliance Meeting 2022 (GBA2022), 2022 | | 2022 |
| Galaxy-SynBioCAD: tools and automated pipelines for Synthetic Biology Design and Metabolic Engineering T Duigou, J Hérisson, M Du Lac, K Bazi-Kabbaj, MS Azad, G Buldum, ... BioSynSys 2022, 2022 | | 2022 |
| Automated Pipeline for Synthetic Biology Design and Engineering JL Faulon, J Herisson, T Duigou | | 2022 |
| The Galaxy-SynBioCAD portal: tools and workflows for synthetic biology and metabolic engineering T Duigou, J Hérisson, JL Faulon, G Gricourt, KB Kabbaj, Y El Moubayed, ... Journées du PEPI IBIS 2021, 2021 | | 2021 |
| Biological Design and Engineering By and For machine Learning L Faure, M Kushwaha, T Duigou, JL Faulon Engineering, Evolution & Design (SEED), 2021 | | 2021 |
| Dynamique d'un réseau métabolique avec un modèle à base de contraintes: approche par échantillonnage des trajectoires solutions T Duigou Paris 11, 2015 | | 2015 |
Jean-Loup FaulonINRA, Micalis Institute, France and U. Manchester, UKGeverifieerd e-mailadres voor inra.fr
