Pedro T. Monteiro

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Claudine ChaouiyaI2M UMR 7373, Aix Marseille University (France)Geverifieerd e-mailadres voor univ-amu.fr
Miguel Cacho TeixeiraAssociate professor with Habilitation, Bioengineering Dept, Instituto Superior Técnico, UniversidadeGeverifieerd e-mailadres voor tecnico.ulisboa.pt
Isabel Sá-CorreiaDistinguished Professor, Instituto Superior Técnico, Universidade de Lisboa and iBBGeverifieerd e-mailadres voor tecnico.ulisboa.pt
Ana Teresa FreitasProfessor of Computer Science, INESC-ID, Instituto Superior Técnico, Universidade Técnica de LisboaGeverifieerd e-mailadres voor inesc-id.pt
Arlindo L OliveiraDistinguished Professor, Instituto Superior Técnico / INESC-IDGeverifieerd e-mailadres voor tecnico.ulisboa.pt
Denis ThieffryProfessor of Systems Biology, Institut de Biologie de l'Ecole Normale Supérieure (IBENS), ParisGeverifieerd e-mailadres voor ens.fr
Hidde de JongINRIAGeverifieerd e-mailadres voor inria.fr
Aurélien NaldiInria, FranceGeverifieerd e-mailadres voor inria.fr
João André CarriçobioMérieux Industry and Researcher, Faculty of Medicine, University of LisbonGeverifieerd e-mailadres voor fm.ul.pt
Nuno P. MiraAssistant Professor, Instituto Superior TécnicoGeverifieerd e-mailadres voor ist.utl.pt
Mario RamirezProfessor of Microbiology, Faculdade de Medicina, Universidade de Lisboa, PortugalGeverifieerd e-mailadres voor fm.ul.pt
Alexandre LemosOutSystems, Instituto superior TécnicoGeverifieerd e-mailadres voor outsystems.com
Ines LynceINESC-ID, Instituto Superior Técnico (IST), Universidade de LisboaGeverifieerd e-mailadres voor tecnico.ulisboa.pt
Tomas HelikarSusan J Rosowski Professor, Department of Biochemistry, University of Nebraska - LincolnGeverifieerd e-mailadres voor unl.edu
Wassim Abou-JaoudéCo-founder at GencoveryGeverifieerd e-mailadres voor gencovery.com
Delphine RopersInriaGeverifieerd e-mailadres voor inria.fr
Margarida PalmaInstituto Superior Técnico. Universidade de Lisboa.Geverifieerd e-mailadres voor tecnico.ulisboa.pt
Michel PageINRIA Grenoble, FranceGeverifieerd e-mailadres voor iae-grenoble.fr
Pedro PaisPost-doctoral Researcher, iBB, ISTGeverifieerd e-mailadres voor tecnico.ulisboa.pt
Julio Saez RodriguezHeidelberg UniversityGeverifieerd e-mailadres voor uni-heidelberg.de

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Pedro T. Monteiro

INESC-ID / IST - Universidade de Lisboa

Geverifieerd e-mailadres voor tecnico.ulisboa.pt - Homepage

Algorithms Computational Biology Formal Verification Biological Networks Discrete event systems


Titel Sorteren op citaties Sorteren op jaar Sorteren op titel	Geciteerd door Geciteerd door	Jaar
The YEASTRACT database: a tool for the analysis of transcription regulatory associations in Saccharomyces cerevisiae MC Teixeira, P Monteiro, P Jain, S Tenreiro, AR Fernandes, NP Mira, ... Nucleic acids research 34 (suppl 1), D446-D451, 2006	604	2006
PHYLOViZ: phylogenetic inference and data visualization for sequence based typing methods AP Francisco, C Vaz, PT Monteiro, J Melo-Cristino, M Ramirez, JA Carriço BMC bioinformatics 13 (1), 1-10, 2012	542	2012
The YEASTRACT database: an upgraded information system for the analysis of gene and genomic transcription regulation in Saccharomyces cerevisiae MC Teixeira, PT Monteiro, JF Guerreiro, JP Gonçalves, NP Mira, ... Nucleic acids research 42 (D1), D161-D166, 2014	278	2014
YEASTRACT: providing a programmatic access to curated transcriptional regulatory associations in Saccharomyces cerevisiae through a web services interface D Abdulrehman, PT Monteiro, MC Teixeira, NP Mira, AB Lourenço, ... Nucleic acids research 39 (suppl 1), D136-D140, 2011	234	2011
Logical modeling and dynamical analysis of cellular networks W Abou-Jaoudé, P Traynard, PT Monteiro, J Saez-Rodriguez, T Helikar, ... Frontiers in genetics 7, 94, 2016	227	2016
YEASTRACT-DISCOVERER: new tools to improve the analysis of transcriptional regulatory associations in Saccharomyces cerevisiae PT Monteiro, ND Mendes, MC Teixeira, S d’Orey, S Tenreiro, NP Mira, ... Nucleic acids research 36 (suppl 1), D132-D136, 2008	200	2008
SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools C Chaouiya, D Bérenguier, SM Keating, A Naldi, MP Van Iersel, ... BMC systems biology 7 (1), 135, 2013	182	2013
SBML Level 3: an extensible format for the exchange and reuse of biological models SM Keating, D Waltemath, M König, F Zhang, A Dräger, C Chaouiya, ... Molecular systems biology 16 (8), e9110, 2020	174	2020
YEASTRACT: an upgraded database for the analysis of transcription regulatory networks in Saccharomyces cerevisiae MC Teixeira, PT Monteiro, M Palma, C Costa, CP Godinho, P Pais, ... Nucleic acids research 46 (D1), D348-D353, 2018	174	2018
YEASTRACT+: a portal for cross-species comparative genomics of transcription regulation in yeasts PT Monteiro, J Oliveira, P Pais, M Antunes, M Palma, M Cavalheiro, ... Nucleic Acids Research 48 (D1), D642-D649, 2020	173	2020
Temporal logic patterns for querying dynamic models of cellular interaction networks PT Monteiro, D Ropers, R Mateescu, AT Freitas, H De Jong Bioinformatics 24 (16), i227-i233, 2008	114	2008
Model checking to assess T-helper cell plasticity W Abou-Jaoudé, PT Monteiro, A Naldi, M Grandclaudon, V Soumelis, ... Frontiers in bioengineering and biotechnology 2, 86, 2015	103	2015
Logical modeling and analysis of cellular regulatory networks with ginsim 3.0 A Naldi, C Hernandez, W Abou-Jaoudé, PT Monteiro, C Chaouiya, ... Frontiers in physiology 9, 646, 2018	90	2018
The CoLoMoTo interactive notebook: accessible and reproducible computational analyses for qualitative biological networks A Naldi, C Hernandez, N Levy, G Stoll, PT Monteiro, C Chaouiya, ... Frontiers in physiology 9, 680, 2018	84	2018
Efficient parameter search for qualitative models of regulatory networks using symbolic model checking G Batt, M Page, I Cantone, G Goessler, P Monteiro, H De Jong Bioinformatics 26 (18), i603-i610, 2010	84	2010
Cooperative development of logical modelling standards and tools with CoLoMoTo A Naldi, PT Monteiro, C Müssel, HA Kestler, D Thieffry, I Xenarios, ... Bioinformatics 31 (7), 1154-1159, 2015	83	2015
Dynamical modeling and analysis of large cellular regulatory networks D Bérenguier, C Chaouiya, PT Monteiro, A Naldi, E Remy, D Thieffry, ... Chaos: An Interdisciplinary Journal of Nonlinear Science 23 (2), 025114, 2013	83	2013
The PathoYeastract database: an information system for the analysis of gene and genomic transcription regulation in pathogenic yeasts PT Monteiro, P Pais, C Costa, S Manna, I Sá-Correia, MC Teixeira Nucleic acids research 45 (D1), D597-D603, 2017	44	2017
Genetic Network Analyzer: A Tool for the Qualitative Modeling and Simulation of Bacterial Regulatory Networks G Batt, B Besson, H de Jong, E Dumas, J Geiselmann, R Monte, ... Bacterial Molecular Networks, 439-462, 2012	44	2012
Hybrid Epithelial–Mesenchymal Phenotypes Are Controlled by Microenvironmental Factors G Selvaggio, S Canato, A Pawar, PT Monteiro, PS Guerreiro, MM Brás, ... Cancer Research 80 (11), 2407-2420, 2020	36	2020

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