Michael Tolstorukov
Michael Tolstorukov
Dana-Farber Cancer Institute
Geverifieerd e-mailadres voor mail.dfci.harvard.edu - Homepage
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ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
SG Landt, GK Marinov, A Kundaje, P Kheradpour, F Pauli, S Batzoglou, ...
Genome research 22 (9), 1813-1831, 2012
16362012
Identification of functional elements and regulatory circuits by Drosophila modENCODE
S Roy, J Ernst, PV Kharchenko, P Kheradpour, N Negre, ML Eaton, ...
Science 330 (6012), 1787-1797, 2010
9002010
Design and analysis of ChIP-seq experiments for DNA-binding proteins
PV Kharchenko, MY Tolstorukov, PJ Park
Nature biotechnology 26 (12), 1351-1359, 2008
9002008
Comprehensive analysis of the chromatin landscape in Drosophila melanogaster
PV Kharchenko, AA Alekseyenko, YB Schwartz, A Minoda, NC Riddle, ...
Nature 471 (7339), 480-485, 2011
8502011
The long noncoding RNAs NEAT1 and MALAT1 bind active chromatin sites
JA West, CP Davis, H Sunwoo, MD Simon, RI Sadreyev, PI Wang, ...
Molecular cell 55 (5), 791-802, 2014
4262014
Comparative analysis of metazoan chromatin organization
JWK Ho, YL Jung, T Liu, BH Alver, S Lee, K Ikegami, KA Sohn, A Minoda, ...
Nature 512 (7515), 449-452, 2014
3202014
CpG islands recruit a histone H3 lysine 36 demethylase
NP Blackledge, JC Zhou, MY Tolstorukov, AM Farcas, PJ Park, RJ Klose
Molecular cell 38 (2), 179-190, 2010
2942010
Plasticity in patterns of histone modifications and chromosomal proteins in Drosophila heterochromatin
NC Riddle, A Minoda, PV Kharchenko, AA Alekseyenko, YB Schwartz, ...
Genome Research 21 (2), 147-163, 2011
2222011
A novel roll-and-slide mechanism of DNA folding in chromatin: implications for nucleosome positioning
MY Tolstorukov, AV Colasanti, DM McCandlish, WK Olson, VB Zhurkin
Journal of molecular biology 371 (3), 725-738, 2007
2172007
Loss of the tumor suppressor Snf5 leads to aberrant activation of the Hedgehog-Gli pathway
Z Jagani, EL Mora-Blanco, CG Sansam, ES McKenna, B Wilson, D Chen, ...
Nature medicine 16 (12), 1429-1433, 2010
2122010
SMARCB1-mediated SWI/SNF complex function is essential for enhancer regulation
X Wang, RS Lee, BH Alver, JR Haswell, S Wang, J Mieczkowski, Y Drier, ...
Nature genetics 49 (2), 289-295, 2017
1752017
Impact of sequencing depth in ChIP-seq experiments
YL Jung, LJ Luquette, JWK Ho, F Ferrari, M Tolstorukov, A Minoda, ...
Nucleic acids research 42 (9), e74-e74, 2014
1652014
Nature and function of insulator protein binding sites in the Drosophila genome
YB Schwartz, D Linder-Basso, PV Kharchenko, MY Tolstorukov, M Kim, ...
Genome research 22 (11), 2188-2198, 2012
1602012
MNase titration reveals differences between nucleosome occupancy and chromatin accessibility
J Mieczkowski, A Cook, SK Bowman, B Mueller, BH Alver, S Kundu, ...
Nature communications 7 (1), 1-11, 2016
1572016
Swi/Snf chromatin remodeling/tumor suppressor complex establishes nucleosome occupancy at target promoters
MY Tolstorukov, CG Sansam, P Lu, EC Koellhoffer, KC Helming, BH Alver, ...
Proceedings of the National Academy of Sciences 110 (25), 10165-10170, 2013
1442013
Histone demethylase KDM6A directly senses oxygen to control chromatin and cell fate
AA Chakraborty, T Laukka, M Myllykoski, AE Ringel, MA Booker, ...
Science 363 (6432), 1217-1222, 2019
1362019
Comparative analysis of H2A. Z nucleosome organization in the human and yeast genomes
MY Tolstorukov, PV Kharchenko, JA Goldman, RE Kingston, PJ Park
Genome research 19 (6), 967-977, 2009
1102009
Histone variant H2A. Bbd is associated with active transcription and mRNA processing in human cells
MY Tolstorukov, JA Goldman, C Gilbert, V Ogryzko, RE Kingston, PJ Park
Molecular cell 47 (4), 596-607, 2012
1092012
The CLAMP protein links the MSL complex to the X chromosome during Drosophila dosage compensation
MML Soruco, J Chery, EP Bishop, T Siggers, MY Tolstorukov, AR Leydon, ...
Genes & development 27 (14), 1551-1556, 2013
902013
Nucleosomal occupancy changes locally over key regulatory regions during cell differentiation and reprogramming
JA West, A Cook, BH Alver, M Stadtfeld, AM Deaton, K Hochedlinger, ...
Nature communications 5 (1), 1-12, 2014
882014
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