Xiang JI
Xiang JI
Assistant Professor, Math Department, Tulane University
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COVID-19: epidemiology, evolution, and cross-disciplinary perspectives
J Sun, WT He, L Wang, A Lai, X Ji, X Zhai, G Li, MA Suchard, J Tian, ...
Trends in molecular medicine 26 (5), 483-495, 2020
Untangling introductions and persistence in COVID-19 resurgence in Europe
P Lemey, N Ruktanonchai, SL Hong, V Colizza, C Poletto, ...
Nature 595 (7869), 713-717, 2021
Virome characterization of game animals in China reveals a spectrum of emerging pathogens
WT He, X Hou, J Zhao, J Sun, H He, W Si, J Wang, Z Jiang, Z Yan, G Xing, ...
Cell 185 (7), 1117-1129. e8, 2022
Genomic epidemiology, evolution, and transmission dynamics of porcine deltacoronavirus
WT He, X Ji, W He, S Dellicour, S Wang, G Li, L Zhang, M Gilbert, H Zhu, ...
Molecular Biology and Evolution 37 (9), 2641-2654, 2020
Context-specific emergence and growth of the SARS-CoV-2 Delta variant
JT McCrone, V Hill, S Bajaj, RE Pena, BC Lambert, R Inward, S Bhatt, ...
Nature 610 (7930), 154-160, 2022
Phylogeography reveals association between swine trade and the spread of porcine epidemic diarrhea virus in China and across the world
WT He, N Bollen, Y Xu, J Zhao, S Dellicour, Z Yan, W Gong, C Zhang, ...
Molecular Biology and Evolution 39 (2), msab364, 2022
Emerging viruses: Cross-species transmission of coronaviruses, filoviruses, henipaviruses, and rotaviruses from bats
J Tian, J Sun, D Li, N Wang, L Wang, C Zhang, X Meng, X Ji, MA Suchard, ...
Cell Reports 39 (11), 2022
Resolving relationships and phylogeographic history of the Nyssa sylvatica complex using data from RAD-seq and species distribution modeling
W Zhou, X Ji, S Obata, A Pais, Y Dong, R Peet, QYJ Xiang
Molecular Phylogenetics and Evolution 126, 1-16, 2018
Gradients Do Grow on Trees: A Linear-Time O(N)-Dimensional Gradient for Statistical Phylogenetics
X Ji, Z Zhang, A Holbrook, A Nishimura, G Baele, A Rambaut, P Lemey, ...
Molecular biology and evolution 37 (10), 3047-3060, 2020
An examination of school reopening strategies during the SARS-CoV-2 pandemic
A Landeros, X Ji, K Lange, TC Stutz, J Xu, ME Sehl, JS Sinsheimer
PLoS One 16 (5), e0251242, 2021
Large-scale inference of correlation among mixed-type biological traits with phylogenetic multivariate probit models
Z Zhang, A Nishimura, P Bastide, X Ji, RP Payne, P Goulder, P Lemey, ...
Snapshot of the evolution and mutation patterns of SARS-CoV-2
J Zhao, J Sun, WT He, X Ji, Q Gao, X Zhai, MA Suchard, SL Hong, ...
BioRxiv, 2020.07. 04.187435, 2020
Divergence dating using mixed effects clock modelling: An application to HIV-1
M Bletsa, MA Suchard, X Ji, S Gryseels, B Vrancken, G Baele, M Worobey, ...
Virus Evolution 5 (2), vez036, 2019
Relaxed random walks at scale
AA Fisher, X Ji, Z Zhang, P Lemey, MA Suchard
Systematic Biology 70 (2), 258-267, 2021
Genetic analysis and evolutionary changes of the torque teno sus virus
G Li, W Zhang, R Wang, G Xing, S Wang, X Ji, N Wang, S Su, J Zhou
International journal of molecular sciences 20 (12), 2881, 2019
Phylogenomics, biogeography, and evolution of the blue‐ or white‐fruited dogwoods (Cornus)—Insights into morphological and ecological niche divergence …
K Lindelof, JA Lindo, W Zhou, X Ji, QY Xiang
Journal of Systematics and Evolution 58 (5), 604-645, 2020
Genomic assessment of invasion dynamics of SARS-CoV-2 Omicron BA. 1
JLH Tsui, JT McCrone, B Lambert, S Bajaj, RPD Inward, P Bosetti, ...
Science 381 (6655), 336-343, 2023
Shrinkage-based random local clocks with scalable inference
AA Fisher, X Ji, A Nishimura, G Baele, P Lemey, MA Suchard
Molecular biology and evolution 40 (11), msad242, 2023
A phylogenetic approach finds abundant interlocus gene conversion in yeast
X Ji, A Griffing, JL Thorne
Molecular biology and evolution 33 (9), 2469-2476, 2016
From viral evolution to spatial contagion: a biologically modulated Hawkes model
AJ Holbrook, X Ji, MA Suchard
Bioinformatics 38 (7), 1846-1856, 2022
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