José Melo-Ferreira
José Melo-Ferreira
Group Leader, Centro de Investigação em Biodiversidade e Recursos Genéticos - CIBIO
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Invasion from the cold past: extensive introgression of mountain hare (Lepus timidus) mitochondrial DNA into three other hare species in northern Iberia
J MELO‐FERREIRA, P Boursot, F Suchentrunk, N Ferrand, PC Alves
Molecular Ecology 14 (8), 2459-2464, 2005
Reference‐free transcriptome assembly in non‐model animals from next‐generation sequencing data
V Cahais, P Gayral, G Tsagkogeorga, J MELO‐FERREIRA, ...
Molecular ecology resources 12 (5), 834-845, 2012
Reference-free population genomics from next-generation transcriptome data and the vertebrate–invertebrate gap
P Gayral, J Melo-Ferreira, S Glémin, N Bierne, M Carneiro, B Nabholz, ...
PLoS genetics 9 (4), e1003457, 2013
Genetic basis for red coloration in birds
RJ Lopes, JD Johnson, MB Toomey, MS Ferreira, PM Araujo, ...
Current Biology 26 (11), 1427-1434, 2016
The rise and fall of the mountain hare (Lepus timidus) during Pleistocene glaciations: expansion and retreat with hybridization in the Iberian Peninsula
J MELO‐FERREIRA, P Boursot, E Randi, A Kryukov, F Suchentrunk, ...
Molecular Ecology 16 (3), 605-618, 2007
The ubiquitous mountain hare mitochondria: multiple introgressive hybridization in hares, genus Lepus
PC Alves, J Melo-Ferreira, H Freitas, P Boursot
Philosophical Transactions of the Royal Society B: Biological Sciences 363 …, 2008
Adaptive introgression underlies polymorphic seasonal camouflage in snowshoe hares
MR Jones, LS Mills, PC Alves, CM Callahan, JM Alves, DJR Lafferty, ...
Science 360 (6395), 1355-1358, 2018
Recurrent introgression of mitochondrial DNA among hares (Lepus spp.) revealed by species-tree inference and coalescent simulations
J Melo-Ferreira, P Boursot, M Carneiro, PJ Esteves, L Farelo, PC Alves
Systematic biology 61 (3), 367-381, 2012
The genomic architecture of population divergence between subspecies of the European rabbit
M Carneiro, FW Albert, S Afonso, RJ Pereira, H Burbano, R Campos, ...
PLoS genetics 10 (8), e1003519, 2014
Evidence for widespread positive and purifying selection across the European rabbit (Oryctolagus cuniculus) genome
M Carneiro, FW Albert, J Melo-Ferreira, N Galtier, P Gayral, ...
Molecular biology and evolution 29 (7), 1837-1849, 2012
The genomic legacy from the extinct Lepus timidus to the three hare species of Iberia: contrast between mtDNA, sex chromosomes and autosomes
J MELO‐FERREIRA, PC Alves, H Freitas, N Ferrand, P Boursot
Molecular Ecology 18 (12), 2643-2658, 2009
The elusive nature of adaptive mitochondrial DNA evolution of an arctic lineage prone to frequent introgression
J Melo-Ferreira, J Vilela, MM Fonseca, RR da Fonseca, P Boursot, ...
Genome biology and evolution 6 (4), 886-896, 2014
Advances in Ecological Speciation: an integrative approach
R Faria, S Renaut, J Galindo, C Pinho, J Melo‐Ferreira, M Melo, F Jones, ...
Molecular ecology 23 (3), 513-521, 2014
Cryptic speciation in the field vole: a multilocus approach confirms three highly divergent lineages in Eurasia
J Paupério, JS Herman, J Melo‐Ferreira, M Jaarola, PC Alves, JB Searle
Molecular ecology 21 (24), 6015-6032, 2012
Hares on thin ice: introgression of mitochondrial DNA in hares and its implications for recent phylogenetic analyses
PC Alves, DJ Harris, J Melo-Ferreira, M Branco, F Suchentrunk, P Boursot, ...
Molecular phylogenetics and evolution 2 (40), 640-641, 2006
Winter color polymorphisms identify global hot spots for evolutionary rescue from climate change
LS Mills, EV Bragina, AV Kumar, M Zimova, DJR Lafferty, J Feltner, ...
Science 359 (6379), 1033-1036, 2018
Introgression of mitochondrial DNA among Myodes voles: consequences for energetics?
Z Boratyński, PC Alves, S Berto, E Koskela, T Mappes, J Melo-Ferreira
BMC evolutionary biology 11 (1), 355, 2011
Function and underlying mechanisms of seasonal colour moulting in mammals and birds: what keeps them changing in a warming world?
M Zimova, K Hackländer, JM Good, J Melo‐Ferreira, PC Alves, LS Mills
Biological Reviews 93 (3), 1478-1498, 2018
Parapatric species and the implications for climate change studies: a case study on hares in Europe
P Acevedo, A Jiménez‐Valverde, J Melo‐Ferreira, R Real, PC Alves
Global Change Biology 18 (5), 1509-1519, 2012
Evidence for genetic similarity of two allopatric European hares (Lepus corsicanus and L. castroviejoi) inferred from nuclear DNA sequences
PC Alves, J Melo-Ferreira, M Branco, F Suchentrunk, N Ferrand, DJ Harris
Molecular phylogenetics and evolution 46 (3), 1191-1197, 2008
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