Michael Imelfort
Michael Imelfort
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CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
DH Parks, M Imelfort, CT Skennerton, P Hugenholtz, GW Tyson
Genome research 25 (7), 1043-1055, 2015
Anaerobic oxidation of methane coupled to nitrate reduction in a novel archaeal lineage
MF Haroon, S Hu, Y Shi, M Imelfort, J Keller, P Hugenholtz, Z Yuan, ...
Nature 500 (7464), 567-570, 2013
Fast, accurate error-correction of amplicon pyrosequences using Acacia
L Bragg, G Stone, M Imelfort, P Hugenholtz, GW Tyson
Nature methods 9 (5), 425-426, 2012
GroopM: an automated tool for the recovery of population genomes from related metagenomes
M Imelfort, D Parks, BJ Woodcroft, P Dennis, P Hugenholtz, GW Tyson
PeerJ 2, e603, 2014
An expanded genomic representation of the phylum Cyanobacteria
RM Soo, CT Skennerton, Y Sekiguchi, M Imelfort, SJ Paech, PG Dennis, ...
Genome biology and evolution 6 (5), 1031-1045, 2014
Crass: identification and reconstruction of CRISPR from unassembled metagenomic data
CT Skennerton, M Imelfort, GW Tyson
Nucleic acids research 41 (10), e105-e105, 2013
Discovering genetic polymorphisms in next‐generation sequencing data
M Imelfort, C Duran, J Batley, D Edwards
Plant biotechnology journal 7 (4), 312-317, 2009
De novo sequencing of plant genomes using second-generation technologies
M Imelfort, D Edwards
Briefings in bioinformatics 10 (6), 609-618, 2009
Sequencing and assembly of low copy and genic regions of isolated Triticum aestivum chromosome arm 7DS
PJ Berkman, A Skarshewski, MT Lorenc, K Lai, C Duran, EYS Ling, ...
Plant biotechnology journal 9 (7), 768-775, 2011
AutoSNPdb: an annotated single nucleotide polymorphism database for crop plants
C Duran, N Appleby, T Clark, D Wood, M Imelfort, J Batley, D Edwards
Nucleic Acids Research 37 (suppl_1), D951-D953, 2009
Bioinformatics tools and databases for analysis of next-generation sequence data
HC Lee, K Lai, MT Lorenc, M Imelfort, C Duran, D Edwards
Briefings in functional genomics 11 (1), 12-24, 2012
Single nucleotide polymorphism discovery in barley using autoSNPdb
C Duran, N Appleby, M Vardy, M Imelfort, D Edwards, J Batley
Plant biotechnology journal 7 (4), 326-333, 2009
The ReFuGe 2020 Consortium—using “omics” approaches to explore the adaptability and resilience of coral holobionts to environmental change
ReFuGe 2020 Consortium
Frontiers in Marine Science 2, 68, 2015
Capturing the biofuel wellhead and powerhouse: the chloroplast and mitochondrial genomes of the leguminous feedstock tree Pongamia pinnata
SH Kazakoff, M Imelfort, D Edwards, J Koehorst, B Biswas, J Batley, ...
PLoS One 7 (12), e51687, 2012
Inferring short tandem repeat variation from paired-end short reads
MD Cao, E Tasker, K Willadsen, M Imelfort, S Vishwanathan, ...
Nucleic acids research 42 (3), e16-e16, 2014
Future tools for association mapping in crop plants
C Duran, D Eales, D Marshall, M Imelfort, J Stiller, PJ Berkman, T Clark, ...
Genome 53 (11), 1017-1023, 2010
Spatial uniformity of microbial diversity in a continuous bioelectrochemical system
PG Dennis, K Guo, M Imelfort, P Jensen, GW Tyson, K Rabaey
Bioresource technology 129, 599-605, 2013
Targeted identification of genomic regions using TAGdb
DJ Marshall, A Hayward, D Eales, M Imelfort, J Stiller, PJ Berkman, ...
Plant Methods 6, 1-6, 2010
Genome sequencing approaches and successes
M Imelfort, J Batley, S Grimmond, D Edwards
Plant Genomics: Methods and Protocols, 345-358, 2009
CMap3D: a 3D visualization tool for comparative genetic maps
C Duran, Z Boskovic, M Imelfort, J Batley, NA Hamilton, D Edwards
Bioinformatics 26 (2), 273-274, 2010
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